Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13010 and RR42_RS13015 are separated by 164 nucleotides RR42_RS13015 and RR42_RS13020 overlap by 1 nucleotides RR42_RS13020 and RR42_RS13025 are separated by 98 nucleotides
RR42_RS13010: RR42_RS13010 - membrane protein, at 2,800,373 to 2,801,248
_RS13010
RR42_RS13015: RR42_RS13015 - fatty acid hydroxylase, at 2,801,413 to 2,802,387
_RS13015
RR42_RS13020: RR42_RS13020 - peptidase A8, at 2,802,387 to 2,803,268
_RS13020
RR42_RS13025: RR42_RS13025 - hypothetical protein, at 2,803,367 to 2,804,353
_RS13025
Position (kb)
2801
2802
2803 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2800.536 kb on + strand, within RR42_RS13010 at 2800.536 kb on + strand, within RR42_RS13010 at 2800.537 kb on - strand, within RR42_RS13010 at 2800.537 kb on - strand, within RR42_RS13010 at 2800.537 kb on - strand, within RR42_RS13010 at 2800.537 kb on - strand, within RR42_RS13010 at 2800.722 kb on + strand, within RR42_RS13010 at 2800.722 kb on + strand, within RR42_RS13010 at 2800.722 kb on + strand, within RR42_RS13010 at 2800.723 kb on - strand, within RR42_RS13010 at 2800.902 kb on + strand, within RR42_RS13010 at 2800.951 kb on + strand, within RR42_RS13010 at 2801.179 kb on + strand at 2801.180 kb on - strand at 2801.180 kb on - strand at 2801.225 kb on + strand at 2801.239 kb on + strand at 2801.289 kb on + strand at 2801.290 kb on - strand at 2801.302 kb on - strand at 2801.444 kb on + strand at 2801.529 kb on - strand, within RR42_RS13015 at 2801.532 kb on - strand, within RR42_RS13015 at 2801.532 kb on - strand, within RR42_RS13015 at 2801.591 kb on + strand, within RR42_RS13015 at 2801.771 kb on + strand, within RR42_RS13015 at 2801.921 kb on + strand, within RR42_RS13015 at 2801.925 kb on + strand, within RR42_RS13015 at 2801.925 kb on + strand, within RR42_RS13015 at 2801.926 kb on - strand, within RR42_RS13015 at 2801.942 kb on + strand, within RR42_RS13015 at 2801.976 kb on - strand, within RR42_RS13015 at 2802.144 kb on - strand, within RR42_RS13015 at 2803.043 kb on + strand, within RR42_RS13020 at 2803.044 kb on - strand, within RR42_RS13020 at 2803.044 kb on - strand, within RR42_RS13020 at 2803.112 kb on - strand, within RR42_RS13020 at 2803.112 kb on - strand, within RR42_RS13020 at 2803.319 kb on + strand at 2803.319 kb on + strand at 2803.319 kb on + strand at 2803.319 kb on + strand at 2803.319 kb on + strand at 2803.320 kb on - strand at 2803.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 2,800,536 + RR42_RS13010 0.19 +0.1 2,800,536 + RR42_RS13010 0.19 +0.0 2,800,537 - RR42_RS13010 0.19 +0.8 2,800,537 - RR42_RS13010 0.19 +0.7 2,800,537 - RR42_RS13010 0.19 +1.0 2,800,537 - RR42_RS13010 0.19 +0.6 2,800,722 + RR42_RS13010 0.40 -2.4 2,800,722 + RR42_RS13010 0.40 +0.8 2,800,722 + RR42_RS13010 0.40 +0.4 2,800,723 - RR42_RS13010 0.40 +0.4 2,800,902 + RR42_RS13010 0.60 -0.2 2,800,951 + RR42_RS13010 0.66 -1.2 2,801,179 + -1.4 2,801,180 - +0.7 2,801,180 - +0.0 2,801,225 + +0.5 2,801,239 + -0.2 2,801,289 + +0.3 2,801,290 - +0.7 2,801,302 - -0.5 2,801,444 + +2.6 2,801,529 - RR42_RS13015 0.12 +0.4 2,801,532 - RR42_RS13015 0.12 +0.1 2,801,532 - RR42_RS13015 0.12 -0.4 2,801,591 + RR42_RS13015 0.18 +1.1 2,801,771 + RR42_RS13015 0.37 +1.5 2,801,921 + RR42_RS13015 0.52 +2.1 2,801,925 + RR42_RS13015 0.53 +2.2 2,801,925 + RR42_RS13015 0.53 +0.9 2,801,926 - RR42_RS13015 0.53 +0.9 2,801,942 + RR42_RS13015 0.54 +1.7 2,801,976 - RR42_RS13015 0.58 -0.2 2,802,144 - RR42_RS13015 0.75 +2.4 2,803,043 + RR42_RS13020 0.74 +1.1 2,803,044 - RR42_RS13020 0.74 -2.7 2,803,044 - RR42_RS13020 0.74 -1.0 2,803,112 - RR42_RS13020 0.82 -0.4 2,803,112 - RR42_RS13020 0.82 -0.0 2,803,319 + -0.7 2,803,319 + +0.5 2,803,319 + +0.2 2,803,319 + +0.6 2,803,319 + +0.6 2,803,320 - -0.7 2,803,320 - -0.7
Or see this region's nucleotide sequence