Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08925

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08920 and RR42_RS08925 are separated by 11 nucleotidesRR42_RS08925 and RR42_RS08930 overlap by 4 nucleotidesRR42_RS08930 and RR42_RS08935 are separated by 10 nucleotides RR42_RS08920: RR42_RS08920 - nitrate reductase, at 1,876,987 to 1,878,510 _RS08920 RR42_RS08925: RR42_RS08925 - nitrate reductase, at 1,878,522 to 1,879,202 _RS08925 RR42_RS08930: RR42_RS08930 - nitrate reductase, at 1,879,199 to 1,879,942 _RS08930 RR42_RS08935: RR42_RS08935 - peptidylprolyl isomerase, at 1,879,953 to 1,880,741 _RS08935 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1at 1877.588 kb on - strand, within RR42_RS08920at 1877.588 kb on - strand, within RR42_RS08920at 1877.668 kb on + strand, within RR42_RS08920at 1877.680 kb on + strand, within RR42_RS08920at 1877.680 kb on + strand, within RR42_RS08920at 1877.680 kb on + strand, within RR42_RS08920at 1877.680 kb on + strand, within RR42_RS08920at 1877.681 kb on - strand, within RR42_RS08920at 1877.681 kb on - strand, within RR42_RS08920at 1877.683 kb on + strand, within RR42_RS08920at 1877.684 kb on - strand, within RR42_RS08920at 1877.684 kb on - strand, within RR42_RS08920at 1877.684 kb on - strand, within RR42_RS08920at 1878.023 kb on - strand, within RR42_RS08920at 1878.046 kb on + strand, within RR42_RS08920at 1878.148 kb on + strand, within RR42_RS08920at 1878.148 kb on + strand, within RR42_RS08920at 1878.149 kb on - strand, within RR42_RS08920at 1878.227 kb on - strand, within RR42_RS08920at 1878.313 kb on + strand, within RR42_RS08920at 1878.314 kb on - strand, within RR42_RS08920at 1878.337 kb on + strand, within RR42_RS08920at 1878.377 kb on - strandat 1878.377 kb on - strandat 1878.508 kb on + strandat 1878.508 kb on + strandat 1878.509 kb on - strandat 1878.702 kb on + strand, within RR42_RS08925at 1878.720 kb on + strand, within RR42_RS08925at 1878.721 kb on - strand, within RR42_RS08925at 1878.828 kb on + strand, within RR42_RS08925at 1878.829 kb on - strand, within RR42_RS08925at 1878.873 kb on + strand, within RR42_RS08925at 1878.873 kb on + strand, within RR42_RS08925at 1879.154 kb on + strandat 1879.155 kb on - strandat 1879.236 kb on - strandat 1879.236 kb on - strandat 1879.241 kb on + strandat 1879.241 kb on + strandat 1879.241 kb on + strandat 1879.242 kb on - strandat 1879.257 kb on + strandat 1879.257 kb on + strandat 1879.298 kb on + strand, within RR42_RS08930at 1879.345 kb on - strand, within RR42_RS08930at 1879.580 kb on - strand, within RR42_RS08930at 1879.632 kb on + strand, within RR42_RS08930at 1879.633 kb on - strand, within RR42_RS08930at 1879.774 kb on + strand, within RR42_RS08930at 1879.844 kb on + strand, within RR42_RS08930at 1879.845 kb on - strand, within RR42_RS08930at 1879.845 kb on - strand, within RR42_RS08930at 1879.860 kb on - strand, within RR42_RS08930at 1879.860 kb on - strand, within RR42_RS08930

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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1,877,588 - RR42_RS08920 0.39 +0.4
1,877,588 - RR42_RS08920 0.39 +1.3
1,877,668 + RR42_RS08920 0.45 -0.7
1,877,680 + RR42_RS08920 0.45 +0.8
1,877,680 + RR42_RS08920 0.45 -0.9
1,877,680 + RR42_RS08920 0.45 +1.1
1,877,680 + RR42_RS08920 0.45 +0.5
1,877,681 - RR42_RS08920 0.46 +0.3
1,877,681 - RR42_RS08920 0.46 +0.6
1,877,683 + RR42_RS08920 0.46 -0.2
1,877,684 - RR42_RS08920 0.46 -1.0
1,877,684 - RR42_RS08920 0.46 +0.7
1,877,684 - RR42_RS08920 0.46 -1.5
1,878,023 - RR42_RS08920 0.68 +0.6
1,878,046 + RR42_RS08920 0.69 -0.4
1,878,148 + RR42_RS08920 0.76 +0.4
1,878,148 + RR42_RS08920 0.76 -0.0
1,878,149 - RR42_RS08920 0.76 -0.5
1,878,227 - RR42_RS08920 0.81 -2.3
1,878,313 + RR42_RS08920 0.87 -1.9
1,878,314 - RR42_RS08920 0.87 +0.3
1,878,337 + RR42_RS08920 0.89 -0.4
1,878,377 - +0.7
1,878,377 - -2.2
1,878,508 + -2.3
1,878,508 + +0.1
1,878,509 - -0.0
1,878,702 + RR42_RS08925 0.26 +0.6
1,878,720 + RR42_RS08925 0.29 +0.6
1,878,721 - RR42_RS08925 0.29 -1.7
1,878,828 + RR42_RS08925 0.45 -0.6
1,878,829 - RR42_RS08925 0.45 -2.3
1,878,873 + RR42_RS08925 0.52 -0.1
1,878,873 + RR42_RS08925 0.52 -1.0
1,879,154 + +0.0
1,879,155 - -1.4
1,879,236 - +0.9
1,879,236 - -0.2
1,879,241 + +0.9
1,879,241 + +1.0
1,879,241 + -3.1
1,879,242 - -0.1
1,879,257 + +1.3
1,879,257 + +1.3
1,879,298 + RR42_RS08930 0.13 +1.2
1,879,345 - RR42_RS08930 0.20 -0.5
1,879,580 - RR42_RS08930 0.51 +0.7
1,879,632 + RR42_RS08930 0.58 +1.4
1,879,633 - RR42_RS08930 0.58 -0.3
1,879,774 + RR42_RS08930 0.77 -2.1
1,879,844 + RR42_RS08930 0.87 -0.5
1,879,845 - RR42_RS08930 0.87 -2.6
1,879,845 - RR42_RS08930 0.87 +0.9
1,879,860 - RR42_RS08930 0.89 -0.8
1,879,860 - RR42_RS08930 0.89 -1.7

Or see this region's nucleotide sequence