Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08805 and RR42_RS08810 are separated by 10 nucleotides RR42_RS08810 and RR42_RS08815 are separated by 106 nucleotides RR42_RS08815 and RR42_RS08820 overlap by 4 nucleotides
RR42_RS08805: RR42_RS08805 - nitrate reductase, at 1,844,368 to 1,845,051
_RS08805
RR42_RS08810: RR42_RS08810 - nitrate reductase, at 1,845,062 to 1,845,766
_RS08810
RR42_RS08815: RR42_RS08815 - nitrate reductase, at 1,845,873 to 1,847,426
_RS08815
RR42_RS08820: RR42_RS08820 - nitrate reductase, at 1,847,423 to 1,851,163
_RS08820
Position (kb)
1845
1846
1847
1848 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1845.011 kb on + strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.012 kb on - strand at 1845.017 kb on + strand at 1845.307 kb on - strand, within RR42_RS08810 at 1845.441 kb on + strand, within RR42_RS08810 at 1845.442 kb on - strand, within RR42_RS08810 at 1845.487 kb on - strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.594 kb on + strand, within RR42_RS08810 at 1845.595 kb on - strand, within RR42_RS08810 at 1846.075 kb on + strand, within RR42_RS08815 at 1846.076 kb on - strand, within RR42_RS08815 at 1846.076 kb on - strand, within RR42_RS08815 at 1846.099 kb on + strand, within RR42_RS08815 at 1846.099 kb on + strand, within RR42_RS08815 at 1846.100 kb on - strand, within RR42_RS08815 at 1846.100 kb on - strand, within RR42_RS08815 at 1846.264 kb on + strand, within RR42_RS08815 at 1846.366 kb on + strand, within RR42_RS08815 at 1846.366 kb on + strand, within RR42_RS08815 at 1846.366 kb on + strand, within RR42_RS08815 at 1846.367 kb on - strand, within RR42_RS08815 at 1846.390 kb on + strand, within RR42_RS08815 at 1846.439 kb on - strand, within RR42_RS08815 at 1846.606 kb on + strand, within RR42_RS08815 at 1846.606 kb on + strand, within RR42_RS08815 at 1846.607 kb on - strand, within RR42_RS08815 at 1846.730 kb on - strand, within RR42_RS08815 at 1846.732 kb on + strand, within RR42_RS08815 at 1846.732 kb on + strand, within RR42_RS08815 at 1846.732 kb on + strand, within RR42_RS08815 at 1846.732 kb on + strand, within RR42_RS08815 at 1846.733 kb on - strand, within RR42_RS08815 at 1846.745 kb on - strand, within RR42_RS08815 at 1846.745 kb on - strand, within RR42_RS08815 at 1846.825 kb on + strand, within RR42_RS08815 at 1846.826 kb on - strand, within RR42_RS08815 at 1846.924 kb on + strand, within RR42_RS08815 at 1846.924 kb on + strand, within RR42_RS08815 at 1847.104 kb on + strand, within RR42_RS08815 at 1847.110 kb on + strand, within RR42_RS08815 at 1847.125 kb on + strand, within RR42_RS08815 at 1847.125 kb on + strand, within RR42_RS08815 at 1847.126 kb on - strand, within RR42_RS08815 at 1847.126 kb on - strand, within RR42_RS08815 at 1847.128 kb on + strand, within RR42_RS08815 at 1847.129 kb on - strand, within RR42_RS08815 at 1847.129 kb on - strand, within RR42_RS08815 at 1847.226 kb on + strand, within RR42_RS08815 at 1847.354 kb on + strand at 1847.541 kb on + strand at 1847.541 kb on + strand at 1847.541 kb on + strand at 1847.542 kb on - strand at 1847.617 kb on + strand at 1847.618 kb on - strand at 1847.685 kb on + strand at 1847.868 kb on + strand, within RR42_RS08820 at 1847.988 kb on + strand, within RR42_RS08820 at 1848.091 kb on + strand, within RR42_RS08820 at 1848.092 kb on - strand, within RR42_RS08820
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 1,845,011 + +0.1 1,845,012 - +1.9 1,845,012 - -1.1 1,845,012 - -0.6 1,845,012 - +0.1 1,845,012 - +0.7 1,845,017 + +0.3 1,845,307 - RR42_RS08810 0.35 -0.6 1,845,441 + RR42_RS08810 0.54 +0.6 1,845,442 - RR42_RS08810 0.54 +0.1 1,845,487 - RR42_RS08810 0.60 +0.3 1,845,594 + RR42_RS08810 0.75 +0.5 1,845,594 + RR42_RS08810 0.75 +0.7 1,845,594 + RR42_RS08810 0.75 +1.1 1,845,595 - RR42_RS08810 0.76 -2.9 1,846,075 + RR42_RS08815 0.13 -0.8 1,846,076 - RR42_RS08815 0.13 -0.6 1,846,076 - RR42_RS08815 0.13 -0.7 1,846,099 + RR42_RS08815 0.15 -0.1 1,846,099 + RR42_RS08815 0.15 -0.2 1,846,100 - RR42_RS08815 0.15 -0.8 1,846,100 - RR42_RS08815 0.15 -1.1 1,846,264 + RR42_RS08815 0.25 +1.8 1,846,366 + RR42_RS08815 0.32 -0.6 1,846,366 + RR42_RS08815 0.32 -0.1 1,846,366 + RR42_RS08815 0.32 +0.7 1,846,367 - RR42_RS08815 0.32 -0.6 1,846,390 + RR42_RS08815 0.33 -0.5 1,846,439 - RR42_RS08815 0.36 +0.4 1,846,606 + RR42_RS08815 0.47 -0.8 1,846,606 + RR42_RS08815 0.47 +0.3 1,846,607 - RR42_RS08815 0.47 +0.9 1,846,730 - RR42_RS08815 0.55 +0.9 1,846,732 + RR42_RS08815 0.55 -3.1 1,846,732 + RR42_RS08815 0.55 -1.1 1,846,732 + RR42_RS08815 0.55 -0.6 1,846,732 + RR42_RS08815 0.55 -0.6 1,846,733 - RR42_RS08815 0.55 -0.7 1,846,745 - RR42_RS08815 0.56 -1.1 1,846,745 - RR42_RS08815 0.56 +0.0 1,846,825 + RR42_RS08815 0.61 -2.3 1,846,826 - RR42_RS08815 0.61 +0.2 1,846,924 + RR42_RS08815 0.68 -0.1 1,846,924 + RR42_RS08815 0.68 +0.0 1,847,104 + RR42_RS08815 0.79 -0.4 1,847,110 + RR42_RS08815 0.80 +0.9 1,847,125 + RR42_RS08815 0.81 -1.5 1,847,125 + RR42_RS08815 0.81 -0.3 1,847,126 - RR42_RS08815 0.81 +1.3 1,847,126 - RR42_RS08815 0.81 -0.4 1,847,128 + RR42_RS08815 0.81 +1.3 1,847,129 - RR42_RS08815 0.81 -0.6 1,847,129 - RR42_RS08815 0.81 -0.0 1,847,226 + RR42_RS08815 0.87 +1.1 1,847,354 + -1.2 1,847,541 + +1.4 1,847,541 + +0.3 1,847,541 + +0.4 1,847,542 - +0.5 1,847,617 + -1.1 1,847,618 - -0.1 1,847,685 + +0.3 1,847,868 + RR42_RS08820 0.12 +0.4 1,847,988 + RR42_RS08820 0.15 +0.0 1,848,091 + RR42_RS08820 0.18 +0.5 1,848,092 - RR42_RS08820 0.18 -1.1
Or see this region's nucleotide sequence