Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07570 and RR42_RS07575 are separated by 145 nucleotides RR42_RS07575 and RR42_RS07580 are separated by 59 nucleotides RR42_RS07580 and RR42_RS07585 are separated by 105 nucleotides RR42_RS07585 and RR42_RS07590 are separated by 16 nucleotides
RR42_RS07570: RR42_RS07570 - hypothetical protein, at 1,621,267 to 1,622,079
_RS07570
RR42_RS07575: RR42_RS07575 - hypothetical protein, at 1,622,225 to 1,622,428
_RS07575
RR42_RS07580: RR42_RS07580 - helicase, at 1,622,488 to 1,624,692
_RS07580
RR42_RS07585: RR42_RS07585 - competence protein ComL, at 1,624,798 to 1,625,628
_RS07585
RR42_RS07590: RR42_RS07590 - pseudouridine synthase, at 1,625,645 to 1,626,862
_RS07590
Position (kb)
1622
1623
1624
1625 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1621.733 kb on - strand, within RR42_RS07570 at 1621.786 kb on + strand, within RR42_RS07570 at 1621.787 kb on - strand, within RR42_RS07570 at 1621.870 kb on + strand, within RR42_RS07570 at 1621.958 kb on + strand, within RR42_RS07570 at 1621.958 kb on + strand, within RR42_RS07570 at 1621.967 kb on - strand, within RR42_RS07570 at 1622.242 kb on + strand at 1622.242 kb on + strand at 1622.242 kb on + strand at 1622.242 kb on + strand at 1622.247 kb on + strand, within RR42_RS07575 at 1622.295 kb on - strand, within RR42_RS07575 at 1622.386 kb on + strand, within RR42_RS07575 at 1622.386 kb on + strand, within RR42_RS07575 at 1622.386 kb on + strand, within RR42_RS07575 at 1622.395 kb on - strand, within RR42_RS07575 at 1622.395 kb on - strand, within RR42_RS07575 at 1622.522 kb on + strand at 1622.550 kb on + strand at 1622.806 kb on + strand, within RR42_RS07580 at 1622.893 kb on - strand, within RR42_RS07580 at 1622.959 kb on + strand, within RR42_RS07580 at 1622.959 kb on + strand, within RR42_RS07580 at 1622.959 kb on + strand, within RR42_RS07580 at 1622.959 kb on + strand, within RR42_RS07580 at 1622.960 kb on - strand, within RR42_RS07580 at 1622.960 kb on - strand, within RR42_RS07580 at 1622.960 kb on - strand, within RR42_RS07580 at 1622.960 kb on - strand, within RR42_RS07580 at 1622.971 kb on + strand, within RR42_RS07580 at 1622.971 kb on + strand, within RR42_RS07580 at 1622.972 kb on - strand, within RR42_RS07580 at 1622.972 kb on - strand, within RR42_RS07580 at 1623.169 kb on + strand, within RR42_RS07580 at 1623.169 kb on + strand, within RR42_RS07580 at 1623.170 kb on - strand, within RR42_RS07580 at 1623.170 kb on - strand, within RR42_RS07580 at 1623.170 kb on - strand, within RR42_RS07580 at 1623.170 kb on - strand, within RR42_RS07580 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.910 kb on - strand, within RR42_RS07580 at 1623.914 kb on + strand, within RR42_RS07580 at 1623.915 kb on - strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.940 kb on + strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1623.941 kb on - strand, within RR42_RS07580 at 1624.001 kb on - strand, within RR42_RS07580 at 1624.021 kb on + strand, within RR42_RS07580 at 1624.171 kb on + strand, within RR42_RS07580 at 1624.171 kb on + strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.172 kb on - strand, within RR42_RS07580 at 1624.339 kb on - strand, within RR42_RS07580 at 1624.527 kb on + strand at 1624.550 kb on - strand at 1624.841 kb on + strand at 1624.850 kb on + strand at 1624.850 kb on + strand at 1624.851 kb on - strand at 1624.851 kb on - strand at 1625.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 1,621,733 - RR42_RS07570 0.57 -0.4 1,621,786 + RR42_RS07570 0.64 -1.0 1,621,787 - RR42_RS07570 0.64 -0.7 1,621,870 + RR42_RS07570 0.74 +0.3 1,621,958 + RR42_RS07570 0.85 +0.6 1,621,958 + RR42_RS07570 0.85 -1.8 1,621,967 - RR42_RS07570 0.86 +0.6 1,622,242 + -0.5 1,622,242 + +0.7 1,622,242 + -3.0 1,622,242 + +0.8 1,622,247 + RR42_RS07575 0.11 -1.8 1,622,295 - RR42_RS07575 0.34 +0.5 1,622,386 + RR42_RS07575 0.79 +1.3 1,622,386 + RR42_RS07575 0.79 -2.9 1,622,386 + RR42_RS07575 0.79 +0.5 1,622,395 - RR42_RS07575 0.83 -0.2 1,622,395 - RR42_RS07575 0.83 +0.7 1,622,522 + +0.8 1,622,550 + +0.4 1,622,806 + RR42_RS07580 0.14 +0.3 1,622,893 - RR42_RS07580 0.18 +0.2 1,622,959 + RR42_RS07580 0.21 -0.0 1,622,959 + RR42_RS07580 0.21 +1.3 1,622,959 + RR42_RS07580 0.21 -0.0 1,622,959 + RR42_RS07580 0.21 -0.1 1,622,960 - RR42_RS07580 0.21 +0.8 1,622,960 - RR42_RS07580 0.21 -1.1 1,622,960 - RR42_RS07580 0.21 +0.2 1,622,960 - RR42_RS07580 0.21 +0.6 1,622,971 + RR42_RS07580 0.22 +0.7 1,622,971 + RR42_RS07580 0.22 -0.6 1,622,972 - RR42_RS07580 0.22 -0.2 1,622,972 - RR42_RS07580 0.22 -0.6 1,623,169 + RR42_RS07580 0.31 -0.3 1,623,169 + RR42_RS07580 0.31 +0.1 1,623,170 - RR42_RS07580 0.31 +1.2 1,623,170 - RR42_RS07580 0.31 -2.0 1,623,170 - RR42_RS07580 0.31 +1.1 1,623,170 - RR42_RS07580 0.31 -1.1 1,623,910 - RR42_RS07580 0.64 -0.0 1,623,910 - RR42_RS07580 0.64 +0.2 1,623,910 - RR42_RS07580 0.64 -0.3 1,623,914 + RR42_RS07580 0.65 +0.1 1,623,915 - RR42_RS07580 0.65 +1.0 1,623,940 + RR42_RS07580 0.66 -0.3 1,623,940 + RR42_RS07580 0.66 -0.2 1,623,940 + RR42_RS07580 0.66 -0.3 1,623,941 - RR42_RS07580 0.66 -0.0 1,623,941 - RR42_RS07580 0.66 +0.7 1,623,941 - RR42_RS07580 0.66 +2.2 1,624,001 - RR42_RS07580 0.69 +0.1 1,624,021 + RR42_RS07580 0.70 +0.5 1,624,171 + RR42_RS07580 0.76 +0.4 1,624,171 + RR42_RS07580 0.76 +0.5 1,624,172 - RR42_RS07580 0.76 +0.1 1,624,172 - RR42_RS07580 0.76 +0.8 1,624,172 - RR42_RS07580 0.76 -1.4 1,624,339 - RR42_RS07580 0.84 -0.6 1,624,527 + +0.1 1,624,550 - -2.3 1,624,841 + -0.9 1,624,850 + -0.4 1,624,850 + -2.2 1,624,851 - -0.8 1,624,851 - -3.2 1,625,667 - -2.2
Or see this region's nucleotide sequence