Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07445

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07435 and RR42_RS07440 overlap by 1 nucleotidesRR42_RS07440 and RR42_RS07445 are separated by 91 nucleotidesRR42_RS07445 and RR42_RS07450 are separated by 1 nucleotides RR42_RS07435: RR42_RS07435 - (Fe-S)-binding protein, at 1,589,906 to 1,591,315 _RS07435 RR42_RS07440: RR42_RS07440 - hypothetical protein, at 1,591,315 to 1,591,590 _RS07440 RR42_RS07445: RR42_RS07445 - ABC transporter ATP-binding protein, at 1,591,682 to 1,592,476 _RS07445 RR42_RS07450: RR42_RS07450 - ABC transporter permease, at 1,592,478 to 1,593,374 _RS07450 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1590.707 kb on + strand, within RR42_RS07435at 1590.763 kb on + strand, within RR42_RS07435at 1590.763 kb on + strand, within RR42_RS07435at 1590.763 kb on + strand, within RR42_RS07435at 1590.763 kb on + strandat 1590.764 kb on - strand, within RR42_RS07435at 1590.764 kb on - strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.767 kb on + strand, within RR42_RS07435at 1590.768 kb on - strand, within RR42_RS07435at 1590.768 kb on - strand, within RR42_RS07435at 1590.872 kb on + strand, within RR42_RS07435at 1590.945 kb on - strand, within RR42_RS07435at 1590.945 kb on - strand, within RR42_RS07435at 1591.143 kb on + strand, within RR42_RS07435at 1591.144 kb on - strand, within RR42_RS07435at 1591.145 kb on + strand, within RR42_RS07435at 1591.145 kb on + strand, within RR42_RS07435at 1591.146 kb on - strand, within RR42_RS07435at 1591.146 kb on - strand, within RR42_RS07435at 1591.146 kb on - strand, within RR42_RS07435at 1591.292 kb on + strandat 1591.293 kb on - strandat 1591.293 kb on - strandat 1591.293 kb on - strandat 1591.505 kb on + strand, within RR42_RS07440at 1591.519 kb on - strand, within RR42_RS07440at 1591.519 kb on - strand, within RR42_RS07440at 1592.100 kb on - strand, within RR42_RS07445at 1592.550 kb on + strandat 1592.665 kb on + strand, within RR42_RS07450at 1592.665 kb on + strand, within RR42_RS07450at 1592.665 kb on + strand, within RR42_RS07450at 1592.666 kb on - strand, within RR42_RS07450at 1592.666 kb on - strand, within RR42_RS07450at 1592.750 kb on + strand, within RR42_RS07450at 1592.796 kb on + strand, within RR42_RS07450at 1592.983 kb on + strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1592.984 kb on - strand, within RR42_RS07450at 1593.079 kb on + strand, within RR42_RS07450at 1593.080 kb on - strand, within RR42_RS07450at 1593.080 kb on - strand, within RR42_RS07450

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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1,590,707 + RR42_RS07435 0.57 -0.3
1,590,763 + RR42_RS07435 0.61 -0.5
1,590,763 + RR42_RS07435 0.61 +0.6
1,590,763 + RR42_RS07435 0.61 -0.3
1,590,763 + -0.6
1,590,764 - RR42_RS07435 0.61 +0.5
1,590,764 - RR42_RS07435 0.61 +1.1
1,590,767 + RR42_RS07435 0.61 +0.8
1,590,767 + RR42_RS07435 0.61 -2.5
1,590,767 + RR42_RS07435 0.61 -0.8
1,590,767 + RR42_RS07435 0.61 +0.7
1,590,767 + RR42_RS07435 0.61 +0.6
1,590,767 + RR42_RS07435 0.61 +1.0
1,590,768 - RR42_RS07435 0.61 +0.2
1,590,768 - RR42_RS07435 0.61 +1.2
1,590,872 + RR42_RS07435 0.69 -1.1
1,590,945 - RR42_RS07435 0.74 -0.0
1,590,945 - RR42_RS07435 0.74 -0.7
1,591,143 + RR42_RS07435 0.88 -0.9
1,591,144 - RR42_RS07435 0.88 -0.5
1,591,145 + RR42_RS07435 0.88 -0.9
1,591,145 + RR42_RS07435 0.88 -3.2
1,591,146 - RR42_RS07435 0.88 -0.6
1,591,146 - RR42_RS07435 0.88 +0.2
1,591,146 - RR42_RS07435 0.88 +0.2
1,591,292 + -2.2
1,591,293 - +0.2
1,591,293 - -0.6
1,591,293 - -0.2
1,591,505 + RR42_RS07440 0.69 +0.1
1,591,519 - RR42_RS07440 0.74 +0.5
1,591,519 - RR42_RS07440 0.74 -0.7
1,592,100 - RR42_RS07445 0.53 +2.3
1,592,550 + +1.0
1,592,665 + RR42_RS07450 0.21 +0.5
1,592,665 + RR42_RS07450 0.21 +0.6
1,592,665 + RR42_RS07450 0.21 -1.3
1,592,666 - RR42_RS07450 0.21 +0.7
1,592,666 - RR42_RS07450 0.21 -1.8
1,592,750 + RR42_RS07450 0.30 +0.9
1,592,796 + RR42_RS07450 0.35 +0.9
1,592,983 + RR42_RS07450 0.56 +1.0
1,592,984 - RR42_RS07450 0.56 -1.0
1,592,984 - RR42_RS07450 0.56 +0.2
1,592,984 - RR42_RS07450 0.56 +0.2
1,592,984 - RR42_RS07450 0.56 -1.0
1,593,079 + RR42_RS07450 0.67 -0.3
1,593,080 - RR42_RS07450 0.67 -1.3
1,593,080 - RR42_RS07450 0.67 +0.1

Or see this region's nucleotide sequence