Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04970

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
1,097,123	+				-3.1
1,097,123	+				-0.1
1,097,156	+				+0.9
1,097,156	+				-0.2
1,097,157	-				-0.7
1,097,157	-				-0.2
1,097,269	+				-0.6
1,097,270	-				+0.5
1,097,300	+				-0.4
1,097,301	-				+0.5
1,097,301	-				+0.1
1,097,301	-				-1.1
1,097,355	+				-2.4
1,097,356	-				-0.3
1,097,356	-				+1.9
1,097,359	-				+0.2
1,097,378	-				+0.0
1,097,378	-				-0.0
1,097,414	+				+0.7
1,097,421	+				+0.8
1,097,447	+				-0.7
1,097,541	+				-1.6
1,097,541	+				-0.4
1,097,655	-		RR42_RS04965	0.20	-0.4
1,097,655	-		RR42_RS04965	0.20	-0.2
1,097,806	+		RR42_RS04965	0.68	-1.2
1,097,806	+		RR42_RS04965	0.68	+0.7
1,097,806	+		RR42_RS04965	0.68	+2.2
1,097,807	-		RR42_RS04965	0.68	-1.2
1,097,929	+				-0.3
1,097,929	+				-0.3
1,097,930	-				+0.2
1,097,939	-				-1.1
1,097,947	+				-0.4
1,098,031	-				-0.5
1,098,035	+				+1.9
1,098,069	-				+0.8
1,098,069	-				+0.1
1,098,074	+				+0.2
1,098,074	+				+1.1
1,098,100	+				+0.0
1,098,100	+				+1.3
1,098,160	+				-0.4
1,098,250	+		RR42_RS04970	0.15	-1.1
1,098,250	+		RR42_RS04970	0.15	+0.3
1,098,250	+		RR42_RS04970	0.15	-0.6
1,098,250	+		RR42_RS04970	0.15	+2.0
1,098,250	+		RR42_RS04970	0.15	+0.2
1,098,251	-		RR42_RS04970	0.15	+1.1
1,098,251	-		RR42_RS04970	0.15	+0.8
1,098,251	-		RR42_RS04970	0.15	-0.4
1,098,251	-		RR42_RS04970	0.15	+0.6
1,098,251	-		RR42_RS04970	0.15	+1.4
1,098,254	+		RR42_RS04970	0.15	+0.2
1,098,255	-		RR42_RS04970	0.16	-3.5
1,098,280	+		RR42_RS04970	0.18	+0.1
1,098,280	+		RR42_RS04970	0.18	-0.4
1,098,280	+		RR42_RS04970	0.18	+0.5
1,098,281	-		RR42_RS04970	0.18	-0.8
1,098,281	-		RR42_RS04970	0.18	+0.6
1,098,281	-		RR42_RS04970	0.18	+0.3
1,098,281	-		RR42_RS04970	0.18	-2.2
1,098,428	-		RR42_RS04970	0.35	-0.0
1,098,445	+		RR42_RS04970	0.37	-1.9
1,098,675	+		RR42_RS04970	0.62	-0.8
1,098,675	+		RR42_RS04970	0.62	-0.7
1,098,675	+		RR42_RS04970	0.62	-0.3
1,098,676	-		RR42_RS04970	0.62	+0.5
1,098,676	-		RR42_RS04970	0.62	+0.2
1,098,676	-		RR42_RS04970	0.62	-2.6
1,098,701	+		RR42_RS04970	0.65	-0.7
1,098,701	+		RR42_RS04970	0.65	+0.6
1,098,701	-		RR42_RS04970	0.65	+0.1
1,098,715	+		RR42_RS04970	0.66	+1.5
1,098,715	+		RR42_RS04970	0.66	+0.7
1,098,716	-		RR42_RS04970	0.67	-0.6
1,098,901	-		RR42_RS04970	0.87	-1.4
1,098,959	-				-1.6
1,098,961	+				-0.2
1,098,961	+				+1.4
1,098,962	-				-0.0
1,098,962	-				+0.8
1,098,962	-				+0.9
1,099,031	+				+0.6
1,099,032	-				-0.1
1,099,032	-				+0.5
1,099,032	-				-0.6
1,099,146	+				+2.3
1,099,147	-				-1.1
1,099,168	-				-2.0
1,099,168	-				-2.1
1,099,168	-				+0.9
1,099,168	-				+0.2
1,099,264	-		RR42_RS04975	0.11	+0.1
1,099,312	+		RR42_RS04975	0.14	-1.0
1,099,343	+		RR42_RS04975	0.16	+1.4
1,099,343	+		RR42_RS04975	0.16	+2.0
1,099,343	+		RR42_RS04975	0.16	-2.0
1,099,344	-		RR42_RS04975	0.16	-0.4
1,099,344	-		RR42_RS04975	0.16	-1.1
1,099,552	-		RR42_RS04975	0.30	-1.0
1,099,555	-		RR42_RS04975	0.30	-0.4
1,099,567	-		RR42_RS04975	0.31	+1.0
1,099,567	-		RR42_RS04975	0.31	-0.0
1,099,608	+		RR42_RS04975	0.34	+1.0
1,099,608	+		RR42_RS04975	0.34	+0.3
1,099,608	+		RR42_RS04975	0.34	+0.5
1,099,609	-		RR42_RS04975	0.34	-0.1
1,099,609	-		RR42_RS04975	0.34	+1.1
1,099,706	+		RR42_RS04975	0.41	+1.3
1,099,706	+		RR42_RS04975	0.41	+0.7
1,099,706	+		RR42_RS04975	0.41	+0.9
1,099,706	+		RR42_RS04975	0.41	+0.2
1,099,707	-		RR42_RS04975	0.41	+0.3
1,099,707	-		RR42_RS04975	0.41	+0.7
1,099,707	-		RR42_RS04975	0.41	-0.8
1,099,707	-		RR42_RS04975	0.41	+0.5
1,099,707	-		RR42_RS04975	0.41	-1.8
1,099,707	-		RR42_RS04975	0.41	-2.4
1,099,811	-		RR42_RS04975	0.48	+0.7
1,099,811	-		RR42_RS04975	0.48	-0.8