Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04210 and RR42_RS04215 overlap by 11 nucleotides RR42_RS04215 and RR42_RS04220 are separated by 6 nucleotides RR42_RS04220 and RR42_RS04225 are separated by 15 nucleotides
RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306
_RS04210
RR42_RS04215: RR42_RS04215 - hypothetical protein, at 933,296 to 933,799
_RS04215
RR42_RS04220: RR42_RS04220 - membrane protein, at 933,806 to 934,666
_RS04220
RR42_RS04225: RR42_RS04225 - hypothetical protein, at 934,682 to 935,302
_RS04225
Position (kb) 933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 932.352 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.581 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.809 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.923 kb on + strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 932.924 kb on - strand, within RR42_RS04210 at 933.019 kb on + strand, within RR42_RS04210 at 933.020 kb on - strand, within RR42_RS04210 at 933.265 kb on + strand at 933.265 kb on + strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.266 kb on - strand at 933.413 kb on + strand, within RR42_RS04215 at 933.445 kb on + strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.446 kb on - strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.532 kb on + strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.533 kb on - strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.534 kb on + strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 933.535 kb on - strand, within RR42_RS04215 at 934.185 kb on + strand, within RR42_RS04220 at 934.186 kb on - strand, within RR42_RS04220 at 934.392 kb on + strand, within RR42_RS04220 at 934.392 kb on + strand, within RR42_RS04220 at 934.424 kb on + strand, within RR42_RS04220 at 934.464 kb on + strand, within RR42_RS04220 at 934.610 kb on + strand at 934.666 kb on + strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.667 kb on - strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.670 kb on + strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand at 934.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 932,352 + RR42_RS04210 0.26 -0.7 932,581 + RR42_RS04210 0.44 -1.3 932,581 + RR42_RS04210 0.44 -0.2 932,809 + RR42_RS04210 0.61 +0.9 932,809 + RR42_RS04210 0.61 -0.3 932,923 + RR42_RS04210 0.70 -0.1 932,923 + RR42_RS04210 0.70 +0.6 932,923 + RR42_RS04210 0.70 -0.3 932,923 + RR42_RS04210 0.70 +1.1 932,924 - RR42_RS04210 0.70 +0.6 932,924 - RR42_RS04210 0.70 -0.7 932,924 - RR42_RS04210 0.70 +0.1 932,924 - RR42_RS04210 0.70 +0.7 933,019 + RR42_RS04210 0.78 +1.6 933,020 - RR42_RS04210 0.78 +0.5 933,265 + +1.4 933,265 + -1.0 933,266 - +0.0 933,266 - +0.5 933,266 - -0.2 933,413 + RR42_RS04215 0.23 +0.2 933,445 + RR42_RS04215 0.30 -0.6 933,446 - RR42_RS04215 0.30 +0.4 933,446 - RR42_RS04215 0.30 -0.5 933,532 + RR42_RS04215 0.47 -1.2 933,532 + RR42_RS04215 0.47 +1.5 933,532 + RR42_RS04215 0.47 +1.4 933,532 + RR42_RS04215 0.47 -0.3 933,533 - RR42_RS04215 0.47 +0.9 933,533 - RR42_RS04215 0.47 -0.8 933,533 - RR42_RS04215 0.47 -0.6 933,533 - RR42_RS04215 0.47 +0.3 933,533 - RR42_RS04215 0.47 -1.6 933,534 + RR42_RS04215 0.47 +0.1 933,534 + RR42_RS04215 0.47 -0.8 933,534 + RR42_RS04215 0.47 +0.1 933,534 + RR42_RS04215 0.47 -0.5 933,535 - RR42_RS04215 0.47 -0.1 933,535 - RR42_RS04215 0.47 -0.7 933,535 - RR42_RS04215 0.47 +1.8 933,535 - RR42_RS04215 0.47 +0.7 933,535 - RR42_RS04215 0.47 +0.4 934,185 + RR42_RS04220 0.44 -0.3 934,186 - RR42_RS04220 0.44 -1.1 934,392 + RR42_RS04220 0.68 -0.4 934,392 + RR42_RS04220 0.68 -1.6 934,424 + RR42_RS04220 0.72 -2.9 934,464 + RR42_RS04220 0.76 -0.9 934,610 + -1.1 934,666 + +0.2 934,667 - +0.2 934,667 - -0.4 934,667 - +1.1 934,667 - -0.7 934,670 + -1.1 934,670 + -0.4 934,670 + -0.6 934,670 + +0.3 934,671 - +0.6 934,671 - -1.3 934,671 - +0.2 934,671 - -0.3 934,671 - -0.9 934,671 - +1.4
Or see this region's nucleotide sequence