Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02885 and RR42_RS02890 are separated by 60 nucleotides RR42_RS02890 and RR42_RS02895 are separated by 327 nucleotides RR42_RS02895 and RR42_RS02900 are separated by 117 nucleotides
RR42_RS02885: RR42_RS02885 - acetylornithine deacetylase, at 644,051 to 645,613
_RS02885
RR42_RS02890: RR42_RS02890 - 4-carboxymuconolactone decarboxylase, at 645,674 to 646,093
_RS02890
RR42_RS02895: RR42_RS02895 - hypothetical protein, at 646,421 to 646,651
_RS02895
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
Position (kb) 646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 645.533 kb on + strand at 645.534 kb on - strand at 645.534 kb on - strand at 645.560 kb on + strand at 645.561 kb on - strand at 645.561 kb on - strand at 645.611 kb on + strand at 645.611 kb on + strand at 645.667 kb on + strand at 645.668 kb on - strand at 645.668 kb on - strand at 645.741 kb on + strand, within RR42_RS02890 at 645.767 kb on + strand, within RR42_RS02890 at 645.767 kb on + strand, within RR42_RS02890 at 645.767 kb on + strand, within RR42_RS02890 at 645.768 kb on - strand, within RR42_RS02890 at 646.016 kb on + strand, within RR42_RS02890 at 646.016 kb on + strand, within RR42_RS02890 at 646.016 kb on + strand, within RR42_RS02890 at 646.016 kb on + strand, within RR42_RS02890 at 646.102 kb on + strand at 646.103 kb on - strand at 646.178 kb on + strand at 646.178 kb on + strand at 646.200 kb on - strand at 646.200 kb on - strand at 646.208 kb on + strand at 646.292 kb on - strand at 646.370 kb on - strand at 646.443 kb on + strand at 646.506 kb on + strand, within RR42_RS02895 at 646.506 kb on + strand, within RR42_RS02895 at 646.507 kb on - strand, within RR42_RS02895 at 646.507 kb on - strand, within RR42_RS02895 at 646.535 kb on + strand, within RR42_RS02895 at 646.536 kb on + strand, within RR42_RS02895 at 646.536 kb on + strand, within RR42_RS02895 at 646.536 kb on + strand, within RR42_RS02895 at 646.536 kb on + strand, within RR42_RS02895 at 646.536 kb on + strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.537 kb on - strand, within RR42_RS02895 at 646.656 kb on + strand at 646.657 kb on - strand at 646.657 kb on - strand at 646.741 kb on + strand at 646.770 kb on + strand at 646.902 kb on + strand, within RR42_RS02900 at 646.902 kb on + strand, within RR42_RS02900 at 646.902 kb on + strand, within RR42_RS02900 at 646.902 kb on + strand, within RR42_RS02900 at 646.902 kb on + strand, within RR42_RS02900 at 646.903 kb on - strand, within RR42_RS02900 at 646.903 kb on - strand, within RR42_RS02900 at 646.906 kb on - strand, within RR42_RS02900 at 646.965 kb on + strand, within RR42_RS02900 at 647.025 kb on - strand, within RR42_RS02900 at 647.046 kb on + strand, within RR42_RS02900 at 647.047 kb on - strand, within RR42_RS02900 at 647.250 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.284 kb on - strand, within RR42_RS02900 at 647.489 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.497 kb on - strand, within RR42_RS02900 at 647.502 kb on + strand, within RR42_RS02900 at 647.503 kb on - strand, within RR42_RS02900
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 645,533 + +1.0 645,534 - -0.3 645,534 - -2.2 645,560 + -1.7 645,561 - -1.0 645,561 - +0.3 645,611 + +0.3 645,611 + +0.3 645,667 + +1.0 645,668 - -0.8 645,668 - -0.5 645,741 + RR42_RS02890 0.16 -0.1 645,767 + RR42_RS02890 0.22 -1.2 645,767 + RR42_RS02890 0.22 -1.2 645,767 + RR42_RS02890 0.22 -0.7 645,768 - RR42_RS02890 0.22 -0.3 646,016 + RR42_RS02890 0.81 -0.2 646,016 + RR42_RS02890 0.81 +1.3 646,016 + RR42_RS02890 0.81 -0.1 646,016 + RR42_RS02890 0.81 -0.8 646,102 + -0.5 646,103 - +1.0 646,178 + -0.2 646,178 + -0.3 646,200 - -0.7 646,200 - -1.5 646,208 + +0.3 646,292 - -0.4 646,370 - +1.2 646,443 + -0.0 646,506 + RR42_RS02895 0.37 -1.0 646,506 + RR42_RS02895 0.37 -0.7 646,507 - RR42_RS02895 0.37 -0.6 646,507 - RR42_RS02895 0.37 -0.6 646,535 + RR42_RS02895 0.49 -0.4 646,536 + RR42_RS02895 0.50 -0.5 646,536 + RR42_RS02895 0.50 +1.3 646,536 + RR42_RS02895 0.50 +1.3 646,536 + RR42_RS02895 0.50 +0.5 646,536 + RR42_RS02895 0.50 +0.7 646,537 - RR42_RS02895 0.50 +0.1 646,537 - RR42_RS02895 0.50 +0.5 646,537 - RR42_RS02895 0.50 +0.6 646,537 - RR42_RS02895 0.50 +1.3 646,537 - RR42_RS02895 0.50 -1.1 646,537 - RR42_RS02895 0.50 -0.3 646,537 - RR42_RS02895 0.50 +0.1 646,656 + -0.8 646,657 - +0.3 646,657 - +0.6 646,741 + -0.1 646,770 + +0.6 646,902 + RR42_RS02900 0.14 -1.6 646,902 + RR42_RS02900 0.14 +1.3 646,902 + RR42_RS02900 0.14 +1.5 646,902 + RR42_RS02900 0.14 +0.4 646,902 + RR42_RS02900 0.14 +0.2 646,903 - RR42_RS02900 0.14 -1.9 646,903 - RR42_RS02900 0.14 -0.8 646,906 - RR42_RS02900 0.15 -0.2 646,965 + RR42_RS02900 0.21 -0.7 647,025 - RR42_RS02900 0.27 +0.3 647,046 + RR42_RS02900 0.29 -3.0 647,047 - RR42_RS02900 0.30 -0.4 647,250 + RR42_RS02900 0.51 -0.4 647,283 + RR42_RS02900 0.55 +0.3 647,283 + RR42_RS02900 0.55 +1.0 647,284 - RR42_RS02900 0.55 +0.3 647,489 + RR42_RS02900 0.76 -2.2 647,496 + RR42_RS02900 0.77 -0.4 647,496 + RR42_RS02900 0.77 +0.2 647,497 - RR42_RS02900 0.77 -2.0 647,502 + RR42_RS02900 0.78 -1.0 647,503 - RR42_RS02900 0.78 -0.4
Or see this region's nucleotide sequence