Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02885

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02880 and RR42_RS02885 are separated by 661 nucleotidesRR42_RS02885 and RR42_RS02890 are separated by 60 nucleotidesRR42_RS02890 and RR42_RS02895 are separated by 327 nucleotides RR42_RS02880: RR42_RS02880 - universal stress protein UspA, at 642,952 to 643,389 _RS02880 RR42_RS02885: RR42_RS02885 - acetylornithine deacetylase, at 644,051 to 645,613 _RS02885 RR42_RS02890: RR42_RS02890 - 4-carboxymuconolactone decarboxylase, at 645,674 to 646,093 _RS02890 RR42_RS02895: RR42_RS02895 - hypothetical protein, at 646,421 to 646,651 _RS02895 Position (kb) 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 643.100 kb on + strand, within RR42_RS02880at 643.101 kb on - strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.252 kb on + strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.253 kb on - strand, within RR42_RS02880at 643.405 kb on + strandat 643.405 kb on + strandat 643.406 kb on - strandat 643.466 kb on + strandat 643.466 kb on + strandat 643.467 kb on - strandat 643.633 kb on + strandat 643.634 kb on - strandat 643.634 kb on - strandat 643.644 kb on + strandat 643.653 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.688 kb on + strandat 643.689 kb on - strandat 643.689 kb on - strandat 643.871 kb on - strandat 643.971 kb on + strandat 643.971 kb on + strandat 643.972 kb on - strandat 644.023 kb on + strandat 644.024 kb on - strandat 644.145 kb on + strandat 644.146 kb on - strandat 644.181 kb on - strandat 644.327 kb on + strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.328 kb on - strand, within RR42_RS02885at 644.387 kb on + strand, within RR42_RS02885at 644.387 kb on + strand, within RR42_RS02885at 644.388 kb on - strand, within RR42_RS02885at 644.452 kb on + strand, within RR42_RS02885at 644.453 kb on - strand, within RR42_RS02885at 644.453 kb on - strand, within RR42_RS02885at 644.510 kb on + strand, within RR42_RS02885at 644.511 kb on - strand, within RR42_RS02885at 644.855 kb on + strand, within RR42_RS02885at 644.856 kb on - strand, within RR42_RS02885at 644.864 kb on + strand, within RR42_RS02885at 644.864 kb on + strand, within RR42_RS02885at 644.864 kb on + strand, within RR42_RS02885at 644.865 kb on - strand, within RR42_RS02885at 644.865 kb on - strand, within RR42_RS02885at 644.865 kb on - strand, within RR42_RS02885at 644.945 kb on + strand, within RR42_RS02885at 644.948 kb on + strand, within RR42_RS02885at 644.949 kb on - strand, within RR42_RS02885at 644.949 kb on - strand, within RR42_RS02885at 645.066 kb on - strand, within RR42_RS02885at 645.294 kb on - strand, within RR42_RS02885at 645.408 kb on - strand, within RR42_RS02885at 645.533 kb on + strandat 645.534 kb on - strandat 645.534 kb on - strandat 645.560 kb on + strandat 645.561 kb on - strandat 645.561 kb on - strandat 645.611 kb on + strandat 645.611 kb on + strandat 645.667 kb on + strandat 645.668 kb on - strandat 645.668 kb on - strandat 645.741 kb on + strand, within RR42_RS02890at 645.767 kb on + strand, within RR42_RS02890at 645.767 kb on + strand, within RR42_RS02890at 645.767 kb on + strand, within RR42_RS02890at 645.768 kb on - strand, within RR42_RS02890at 646.016 kb on + strand, within RR42_RS02890at 646.016 kb on + strand, within RR42_RS02890at 646.016 kb on + strand, within RR42_RS02890at 646.016 kb on + strand, within RR42_RS02890at 646.102 kb on + strandat 646.103 kb on - strandat 646.178 kb on + strandat 646.178 kb on + strandat 646.200 kb on - strandat 646.200 kb on - strandat 646.208 kb on + strandat 646.292 kb on - strandat 646.370 kb on - strandat 646.443 kb on + strandat 646.506 kb on + strand, within RR42_RS02895at 646.506 kb on + strand, within RR42_RS02895at 646.507 kb on - strand, within RR42_RS02895at 646.507 kb on - strand, within RR42_RS02895at 646.535 kb on + strand, within RR42_RS02895at 646.536 kb on + strand, within RR42_RS02895at 646.536 kb on + strand, within RR42_RS02895at 646.536 kb on + strand, within RR42_RS02895at 646.536 kb on + strand, within RR42_RS02895at 646.536 kb on + strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895at 646.537 kb on - strand, within RR42_RS02895

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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643,100 + RR42_RS02880 0.34 +0.1
643,101 - RR42_RS02880 0.34 +4.6
643,252 + RR42_RS02880 0.68 -1.4
643,252 + RR42_RS02880 0.68 +0.6
643,252 + RR42_RS02880 0.68 -1.7
643,253 - RR42_RS02880 0.69 +1.4
643,253 - RR42_RS02880 0.69 -1.9
643,253 - RR42_RS02880 0.69 -0.3
643,405 + -0.1
643,405 + -1.0
643,406 - +1.0
643,466 + -2.0
643,466 + +0.9
643,467 - -1.5
643,633 + +1.1
643,634 - -0.5
643,634 - +0.9
643,644 + -0.1
643,653 + -0.0
643,688 + -1.0
643,688 + -1.1
643,688 + -0.6
643,688 + +0.8
643,689 - -0.9
643,689 - +0.7
643,871 - -0.1
643,971 + +1.7
643,971 + +0.6
643,972 - +0.7
644,023 + +0.3
644,024 - -1.3
644,145 + -0.9
644,146 - +0.1
644,181 - -0.7
644,327 + RR42_RS02885 0.18 -0.4
644,328 - RR42_RS02885 0.18 -0.8
644,328 - RR42_RS02885 0.18 -0.6
644,328 - RR42_RS02885 0.18 +0.2
644,328 - RR42_RS02885 0.18 -0.2
644,387 + RR42_RS02885 0.21 -0.0
644,387 + RR42_RS02885 0.21 +0.4
644,388 - RR42_RS02885 0.22 +1.7
644,452 + RR42_RS02885 0.26 +1.1
644,453 - RR42_RS02885 0.26 -0.1
644,453 - RR42_RS02885 0.26 -0.0
644,510 + RR42_RS02885 0.29 -0.4
644,511 - RR42_RS02885 0.29 -1.0
644,855 + RR42_RS02885 0.51 +0.1
644,856 - RR42_RS02885 0.52 -1.5
644,864 + RR42_RS02885 0.52 -0.7
644,864 + RR42_RS02885 0.52 -0.2
644,864 + RR42_RS02885 0.52 -0.1
644,865 - RR42_RS02885 0.52 +1.2
644,865 - RR42_RS02885 0.52 -0.1
644,865 - RR42_RS02885 0.52 -3.2
644,945 + RR42_RS02885 0.57 +2.0
644,948 + RR42_RS02885 0.57 +1.6
644,949 - RR42_RS02885 0.57 +1.4
644,949 - RR42_RS02885 0.57 +0.0
645,066 - RR42_RS02885 0.65 -0.3
645,294 - RR42_RS02885 0.80 -0.6
645,408 - RR42_RS02885 0.87 +0.3
645,533 + +1.0
645,534 - -0.3
645,534 - -2.2
645,560 + -1.7
645,561 - -1.0
645,561 - +0.3
645,611 + +0.3
645,611 + +0.3
645,667 + +1.0
645,668 - -0.8
645,668 - -0.5
645,741 + RR42_RS02890 0.16 -0.1
645,767 + RR42_RS02890 0.22 -1.2
645,767 + RR42_RS02890 0.22 -1.2
645,767 + RR42_RS02890 0.22 -0.7
645,768 - RR42_RS02890 0.22 -0.3
646,016 + RR42_RS02890 0.81 -0.2
646,016 + RR42_RS02890 0.81 +1.3
646,016 + RR42_RS02890 0.81 -0.1
646,016 + RR42_RS02890 0.81 -0.8
646,102 + -0.5
646,103 - +1.0
646,178 + -0.2
646,178 + -0.3
646,200 - -0.7
646,200 - -1.5
646,208 + +0.3
646,292 - -0.4
646,370 - +1.2
646,443 + -0.0
646,506 + RR42_RS02895 0.37 -1.0
646,506 + RR42_RS02895 0.37 -0.7
646,507 - RR42_RS02895 0.37 -0.6
646,507 - RR42_RS02895 0.37 -0.6
646,535 + RR42_RS02895 0.49 -0.4
646,536 + RR42_RS02895 0.50 -0.5
646,536 + RR42_RS02895 0.50 +1.3
646,536 + RR42_RS02895 0.50 +1.3
646,536 + RR42_RS02895 0.50 +0.5
646,536 + RR42_RS02895 0.50 +0.7
646,537 - RR42_RS02895 0.50 +0.1
646,537 - RR42_RS02895 0.50 +0.5
646,537 - RR42_RS02895 0.50 +0.6
646,537 - RR42_RS02895 0.50 +1.3
646,537 - RR42_RS02895 0.50 -1.1
646,537 - RR42_RS02895 0.50 -0.3
646,537 - RR42_RS02895 0.50 +0.1

Or see this region's nucleotide sequence