Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02350 and RR42_RS02355 are separated by 3 nucleotides RR42_RS02355 and RR42_RS02360 are separated by 127 nucleotides RR42_RS02360 and RR42_RS02365 are separated by 15 nucleotides
RR42_RS02350: RR42_RS02350 - VWA domain-containing protein, at 526,404 to 527,699
_RS02350
RR42_RS02355: RR42_RS02355 - ATPase, at 527,703 to 528,599
_RS02355
RR42_RS02360: RR42_RS02360 - carbon monoxide dehydrogenase, at 528,727 to 529,527
_RS02360
RR42_RS02365: RR42_RS02365 - carbon monoxide dehydrogenase, at 529,543 to 531,924
_RS02365
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1 at 526.957 kb on + strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.975 kb on + strand, within RR42_RS02350 at 527.044 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.540 kb on - strand, within RR42_RS02350 at 527.776 kb on + strand at 527.777 kb on - strand at 528.004 kb on + strand, within RR42_RS02355 at 528.020 kb on - strand, within RR42_RS02355 at 528.283 kb on + strand, within RR42_RS02355 at 528.284 kb on - strand, within RR42_RS02355 at 528.352 kb on + strand, within RR42_RS02355 at 528.364 kb on + strand, within RR42_RS02355 at 528.394 kb on + strand, within RR42_RS02355 at 528.395 kb on - strand, within RR42_RS02355 at 528.514 kb on + strand at 528.547 kb on + strand at 528.547 kb on + strand at 529.010 kb on + strand, within RR42_RS02360 at 529.010 kb on + strand, within RR42_RS02360 at 529.011 kb on - strand, within RR42_RS02360 at 529.079 kb on + strand, within RR42_RS02360 at 529.376 kb on - strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.448 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 526,957 + RR42_RS02350 0.43 -0.4 526,958 - RR42_RS02350 0.43 -2.3 526,958 - RR42_RS02350 0.43 -0.5 526,958 - RR42_RS02350 0.43 -1.3 526,975 + RR42_RS02350 0.44 -0.4 527,044 + RR42_RS02350 0.49 -1.7 527,539 + RR42_RS02350 0.88 +0.2 527,539 + RR42_RS02350 0.88 -0.4 527,539 + RR42_RS02350 0.88 -1.5 527,540 - RR42_RS02350 0.88 -1.5 527,776 + -0.3 527,777 - +0.3 528,004 + RR42_RS02355 0.34 -2.0 528,020 - RR42_RS02355 0.35 -0.2 528,283 + RR42_RS02355 0.65 -1.4 528,284 - RR42_RS02355 0.65 -0.6 528,352 + RR42_RS02355 0.72 -0.8 528,364 + RR42_RS02355 0.74 +0.7 528,394 + RR42_RS02355 0.77 -1.4 528,395 - RR42_RS02355 0.77 +0.1 528,514 + -0.7 528,547 + -0.2 528,547 + +0.0 529,010 + RR42_RS02360 0.35 +0.3 529,010 + RR42_RS02360 0.35 +0.2 529,011 - RR42_RS02360 0.35 +0.5 529,079 + RR42_RS02360 0.44 -0.1 529,376 - RR42_RS02360 0.81 -1.7 529,408 + RR42_RS02360 0.85 +0.6 529,408 + RR42_RS02360 0.85 +0.3 529,448 + -0.7 529,523 + -0.3 529,523 + -0.7 529,523 + -0.3 529,524 - -1.7 529,524 - +0.5 529,524 - -0.1 529,549 - +0.3
Or see this region's nucleotide sequence