Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01810

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01805 and RR42_RS01810 overlap by 1 nucleotidesRR42_RS01810 and RR42_RS01815 are separated by 15 nucleotidesRR42_RS01815 and RR42_RS01820 are separated by 62 nucleotides RR42_RS01805: RR42_RS01805 - selenophosphate synthase, at 410,086 to 411,153 _RS01805 RR42_RS01810: RR42_RS01810 - tRNA 2-selenouridine synthase, at 411,153 to 412,277 _RS01810 RR42_RS01815: RR42_RS01815 - molybdopterin biosynthesis protein MoeB, at 412,293 to 413,060 _RS01815 RR42_RS01820: RR42_RS01820 - peptidase S41, at 413,123 to 414,712 _RS01820 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.245 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805at 410.881 kb on + strand, within RR42_RS01805at 410.881 kb on + strand, within RR42_RS01805at 410.882 kb on - strand, within RR42_RS01805at 410.929 kb on - strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.933 kb on - strand, within RR42_RS01805at 411.133 kb on + strandat 411.165 kb on - strandat 411.309 kb on + strand, within RR42_RS01810at 411.310 kb on - strand, within RR42_RS01810at 411.310 kb on - strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.433 kb on - strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.812 kb on - strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810at 412.167 kb on + strandat 412.167 kb on + strandat 412.167 kb on + strandat 412.168 kb on - strandat 412.168 kb on - strandat 412.168 kb on - strandat 412.168 kb on - strandat 412.168 kb on - strandat 412.170 kb on + strandat 412.170 kb on + strandat 412.171 kb on - strandat 412.171 kb on - strandat 412.171 kb on - strandat 412.182 kb on + strandat 412.182 kb on + strandat 412.182 kb on + strandat 412.182 kb on + strandat 412.183 kb on - strandat 412.183 kb on - strandat 412.183 kb on - strandat 412.183 kb on - strandat 412.183 kb on - strandat 412.183 kb on - strandat 412.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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410,245 + RR42_RS01805 0.15 -1.0
410,368 + RR42_RS01805 0.26 -0.0
410,368 + RR42_RS01805 0.26 -2.4
410,368 + RR42_RS01805 0.26 -2.1
410,368 + RR42_RS01805 0.26 -1.2
410,368 + RR42_RS01805 0.26 -0.7
410,368 + RR42_RS01805 0.26 +0.7
410,369 - RR42_RS01805 0.26 +0.6
410,369 - RR42_RS01805 0.26 -2.1
410,369 - RR42_RS01805 0.26 -0.1
410,369 - RR42_RS01805 0.26 -0.4
410,369 - RR42_RS01805 0.26 +1.0
410,614 + RR42_RS01805 0.49 +2.1
410,614 + RR42_RS01805 0.49 -0.7
410,614 + RR42_RS01805 0.49 -0.8
410,615 - RR42_RS01805 0.50 -0.0
410,615 - RR42_RS01805 0.50 -2.7
410,881 + RR42_RS01805 0.74 -0.4
410,881 + RR42_RS01805 0.74 +0.9
410,882 - RR42_RS01805 0.75 -1.6
410,929 - RR42_RS01805 0.79 -1.5
410,932 + RR42_RS01805 0.79 +1.0
410,932 + RR42_RS01805 0.79 -0.6
410,932 + RR42_RS01805 0.79 +0.1
410,932 + RR42_RS01805 0.79 -0.4
410,932 + RR42_RS01805 0.79 -0.2
410,933 - RR42_RS01805 0.79 -2.4
411,133 + -1.0
411,165 - -2.8
411,309 + RR42_RS01810 0.14 -1.0
411,310 - RR42_RS01810 0.14 -0.3
411,310 - RR42_RS01810 0.14 +1.1
411,432 + RR42_RS01810 0.25 +1.3
411,432 + RR42_RS01810 0.25 +0.3
411,432 + RR42_RS01810 0.25 -1.2
411,432 + RR42_RS01810 0.25 -1.1
411,433 - RR42_RS01810 0.25 -0.7
411,536 + RR42_RS01810 0.34 -2.0
411,536 + RR42_RS01810 0.34 -1.1
411,536 + RR42_RS01810 0.34 +2.5
411,537 - RR42_RS01810 0.34 +0.0
411,537 - RR42_RS01810 0.34 +0.2
411,537 - RR42_RS01810 0.34 +0.5
411,537 - RR42_RS01810 0.34 -1.0
411,812 - RR42_RS01810 0.59 +1.0
411,864 + RR42_RS01810 0.63 +0.1
411,864 + RR42_RS01810 0.63 -3.3
411,864 + RR42_RS01810 0.63 -0.5
411,864 + RR42_RS01810 0.63 -1.5
411,942 + RR42_RS01810 0.70 +0.3
411,942 + RR42_RS01810 0.70 -0.6
411,942 + RR42_RS01810 0.70 +1.1
411,942 + RR42_RS01810 0.70 +0.6
411,942 + RR42_RS01810 0.70 +1.3
411,943 - RR42_RS01810 0.70 +0.1
411,943 - RR42_RS01810 0.70 -0.7
411,943 - RR42_RS01810 0.70 -0.2
412,167 + +1.0
412,167 + +1.3
412,167 + -1.8
412,168 - -1.7
412,168 - -0.1
412,168 - +0.9
412,168 - -0.6
412,168 - -0.7
412,170 + -2.5
412,170 + -1.2
412,171 - +0.8
412,171 - +1.6
412,171 - -0.6
412,182 + -0.2
412,182 + -0.6
412,182 + -0.1
412,182 + -0.9
412,183 - +0.3
412,183 - -1.0
412,183 - -0.5
412,183 - -1.0
412,183 - -0.6
412,183 - +1.3
412,183 - +0.0

Or see this region's nucleotide sequence