Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01215

Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01210 and RR42_RS01215 are separated by 78 nucleotidesRR42_RS01215 and RR42_RS01220 are separated by 30 nucleotidesRR42_RS01220 and RR42_RS01225 are separated by 30 nucleotides RR42_RS01210: RR42_RS01210 - n-acetyl-gamma-glutamyl-phosphate reductase, at 275,725 to 276,672 _RS01210 RR42_RS01215: RR42_RS01215 - hypothetical protein, at 276,751 to 276,939 _RS01215 RR42_RS01220: RR42_RS01220 - exodeoxyribonuclease III, at 276,970 to 277,746 _RS01220 RR42_RS01225: RR42_RS01225 - orotate phosphoribosyltransferase, at 277,777 to 278,466 _RS01225 Position (kb) 276 277Strain fitness (log2 ratio) -2 -1 0 1 2at 275.966 kb on + strand, within RR42_RS01210at 275.966 kb on + strand, within RR42_RS01210at 275.967 kb on - strand, within RR42_RS01210at 276.230 kb on + strand, within RR42_RS01210at 276.399 kb on - strand, within RR42_RS01210at 276.450 kb on + strand, within RR42_RS01210at 276.451 kb on - strand, within RR42_RS01210at 276.612 kb on - strandat 276.652 kb on + strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.653 kb on - strandat 276.692 kb on - strandat 276.692 kb on - strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.733 kb on + strandat 276.734 kb on - strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.737 kb on + strandat 276.738 kb on - strandat 276.738 kb on - strandat 276.738 kb on - strandat 276.781 kb on - strand, within RR42_RS01215at 276.784 kb on + strand, within RR42_RS01215at 276.784 kb on + strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.785 kb on - strand, within RR42_RS01215at 276.938 kb on - strandat 276.965 kb on - strandat 276.965 kb on - strandat 276.965 kb on - strandat 276.971 kb on + strandat 276.971 kb on + strandat 276.972 kb on - strandat 276.972 kb on - strandat 276.972 kb on - strandat 277.031 kb on + strandat 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.142 kb on + strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.143 kb on - strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.421 kb on + strand, within RR42_RS01220at 277.422 kb on - strand, within RR42_RS01220at 277.448 kb on + strand, within RR42_RS01220at 277.463 kb on + strand, within RR42_RS01220at 277.548 kb on + strand, within RR42_RS01220at 277.548 kb on + strand, within RR42_RS01220at 277.549 kb on - strand, within RR42_RS01220at 277.568 kb on + strand, within RR42_RS01220at 277.577 kb on + strand, within RR42_RS01220at 277.577 kb on + strand, within RR42_RS01220at 277.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
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275,966 + RR42_RS01210 0.25 -1.5
275,966 + RR42_RS01210 0.25 -1.4
275,967 - RR42_RS01210 0.26 +0.2
276,230 + RR42_RS01210 0.53 -0.1
276,399 - RR42_RS01210 0.71 -1.3
276,450 + RR42_RS01210 0.76 -0.9
276,451 - RR42_RS01210 0.77 -1.0
276,612 - +0.1
276,652 + -0.8
276,653 - +1.3
276,653 - +0.4
276,653 - -0.1
276,653 - -1.2
276,692 - +0.8
276,692 - +0.1
276,733 + -0.2
276,733 + +1.2
276,733 + -0.6
276,733 + +1.2
276,734 - -0.6
276,737 + -0.6
276,737 + -0.3
276,737 + -1.1
276,737 + +1.7
276,737 + -2.3
276,737 + -0.9
276,737 + +0.3
276,738 - +0.1
276,738 - +0.4
276,738 - -1.2
276,781 - RR42_RS01215 0.16 -0.1
276,784 + RR42_RS01215 0.17 -0.8
276,784 + RR42_RS01215 0.17 +0.2
276,785 - RR42_RS01215 0.18 +0.5
276,785 - RR42_RS01215 0.18 -0.5
276,785 - RR42_RS01215 0.18 +0.0
276,938 - +1.2
276,965 - +2.4
276,965 - +0.1
276,965 - -1.2
276,971 + -0.5
276,971 + +0.5
276,972 - +1.1
276,972 - +1.0
276,972 - +0.3
277,031 + -0.3
277,142 + RR42_RS01220 0.22 -0.6
277,142 + RR42_RS01220 0.22 -0.7
277,142 + RR42_RS01220 0.22 +1.0
277,142 + RR42_RS01220 0.22 +2.2
277,142 + RR42_RS01220 0.22 -0.4
277,143 - RR42_RS01220 0.22 -0.2
277,143 - RR42_RS01220 0.22 -0.7
277,143 - RR42_RS01220 0.22 -0.2
277,143 - RR42_RS01220 0.22 -1.9
277,143 - RR42_RS01220 0.22 -1.7
277,421 + RR42_RS01220 0.58 -0.2
277,421 + RR42_RS01220 0.58 -0.9
277,421 + RR42_RS01220 0.58 +2.0
277,422 - RR42_RS01220 0.58 +0.8
277,448 + RR42_RS01220 0.62 -0.2
277,463 + RR42_RS01220 0.63 -0.8
277,548 + RR42_RS01220 0.74 -1.3
277,548 + RR42_RS01220 0.74 -0.5
277,549 - RR42_RS01220 0.75 -1.1
277,568 + RR42_RS01220 0.77 +0.1
277,577 + RR42_RS01220 0.78 +0.1
277,577 + RR42_RS01220 0.78 +1.4
277,734 + -1.0

Or see this region's nucleotide sequence