Experiment: Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00250 and RR42_RS00255 are separated by 271 nucleotides RR42_RS00255 and RR42_RS00260 are separated by 55 nucleotides RR42_RS00260 and RR42_RS00265 are separated by 71 nucleotides
RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166
_RS00250
RR42_RS00255: RR42_RS00255 - ABC transporter permease, at 77,438 to 78,121
_RS00255
RR42_RS00260: RR42_RS00260 - amino acid ABC transporter permease, at 78,177 to 78,821
_RS00260
RR42_RS00265: RR42_RS00265 - phosphate ABC transporter ATP-binding protein, at 78,893 to 79,621
_RS00265
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 76.461 kb on - strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.667 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 77.006 kb on - strand, within RR42_RS00250 at 77.069 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.277 kb on - strand at 77.444 kb on + strand at 77.444 kb on + strand at 77.616 kb on - strand, within RR42_RS00255 at 77.739 kb on + strand, within RR42_RS00255 at 77.750 kb on - strand, within RR42_RS00255 at 77.879 kb on + strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 78.008 kb on + strand, within RR42_RS00255 at 78.209 kb on + strand at 78.390 kb on + strand, within RR42_RS00260 at 78.391 kb on - strand, within RR42_RS00260 at 78.459 kb on + strand, within RR42_RS00260 at 78.460 kb on - strand, within RR42_RS00260 at 78.460 kb on - strand, within RR42_RS00260 at 78.472 kb on - strand, within RR42_RS00260 at 78.651 kb on + strand, within RR42_RS00260 at 78.652 kb on - strand, within RR42_RS00260 at 78.753 kb on + strand, within RR42_RS00260 at 78.753 kb on + strand, within RR42_RS00260 at 78.754 kb on - strand, within RR42_RS00260 at 78.789 kb on + strand at 78.790 kb on - strand at 79.080 kb on + strand, within RR42_RS00265 at 79.081 kb on - strand, within RR42_RS00265 at 79.081 kb on - strand, within RR42_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 10 mg/mL remove 76,461 - RR42_RS00250 0.33 -1.9 76,666 + RR42_RS00250 0.52 -2.5 76,666 + RR42_RS00250 0.52 +0.7 76,667 - RR42_RS00250 0.52 -1.2 76,779 - RR42_RS00250 0.63 -1.9 76,779 - RR42_RS00250 0.63 -0.4 77,006 - RR42_RS00250 0.85 -1.7 77,069 + -2.5 77,276 + -2.3 77,276 + -0.9 77,276 + -1.6 77,276 + -3.1 77,276 + -0.2 77,277 - +0.6 77,444 + +0.2 77,444 + +0.1 77,616 - RR42_RS00255 0.26 +0.4 77,739 + RR42_RS00255 0.44 -1.1 77,750 - RR42_RS00255 0.46 -0.8 77,879 + RR42_RS00255 0.64 -0.7 77,880 - RR42_RS00255 0.65 -0.1 77,880 - RR42_RS00255 0.65 -1.4 78,008 + RR42_RS00255 0.83 -0.7 78,209 + -0.9 78,390 + RR42_RS00260 0.33 +1.3 78,391 - RR42_RS00260 0.33 +1.7 78,459 + RR42_RS00260 0.44 -0.6 78,460 - RR42_RS00260 0.44 +1.2 78,460 - RR42_RS00260 0.44 +1.3 78,472 - RR42_RS00260 0.46 +0.5 78,651 + RR42_RS00260 0.73 +1.4 78,652 - RR42_RS00260 0.74 -1.3 78,753 + RR42_RS00260 0.89 -0.3 78,753 + RR42_RS00260 0.89 -1.6 78,754 - RR42_RS00260 0.89 -0.7 78,789 + -0.3 78,790 - +0.1 79,080 + RR42_RS00265 0.26 +0.6 79,081 - RR42_RS00265 0.26 +0.3 79,081 - RR42_RS00265 0.26 +1.1
Or see this region's nucleotide sequence