Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18490 and HSERO_RS18495 overlap by 4 nucleotides HSERO_RS18495 and HSERO_RS18500 overlap by 4 nucleotides HSERO_RS18500 and HSERO_RS18505 overlap by 14 nucleotides
HSERO_RS18490: HSERO_RS18490 - AMP-binding protein, at 4,242,860 to 4,244,638
_RS18490
HSERO_RS18495: HSERO_RS18495 - glycosyl transferase, at 4,244,635 to 4,245,423
_RS18495
HSERO_RS18500: HSERO_RS18500 - acyltransferase, at 4,245,420 to 4,246,382
_RS18500
HSERO_RS18505: HSERO_RS18505 - histidine ammonia-lyase, at 4,246,369 to 4,247,949
_RS18505
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -1
0
1 at 4244.427 kb on - strand, within HSERO_RS18490 at 4244.440 kb on + strand, within HSERO_RS18490 at 4244.460 kb on - strand, within HSERO_RS18490 at 4244.534 kb on + strand at 4244.726 kb on + strand, within HSERO_RS18495 at 4244.726 kb on + strand, within HSERO_RS18495 at 4244.734 kb on - strand, within HSERO_RS18495 at 4244.782 kb on + strand, within HSERO_RS18495 at 4244.841 kb on + strand, within HSERO_RS18495 at 4244.855 kb on - strand, within HSERO_RS18495 at 4245.131 kb on - strand, within HSERO_RS18495 at 4245.241 kb on - strand, within HSERO_RS18495 at 4245.463 kb on - strand at 4245.486 kb on + strand at 4245.713 kb on + strand, within HSERO_RS18500 at 4245.736 kb on - strand, within HSERO_RS18500 at 4245.844 kb on - strand, within HSERO_RS18500 at 4246.172 kb on + strand, within HSERO_RS18500 at 4246.198 kb on + strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.258 kb on - strand, within HSERO_RS18500 at 4246.409 kb on - strand at 4246.644 kb on + strand, within HSERO_RS18505 at 4246.883 kb on - strand, within HSERO_RS18505 at 4246.887 kb on + strand, within HSERO_RS18505 at 4247.019 kb on + strand, within HSERO_RS18505
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 4,244,427 - HSERO_RS18490 0.88 -0.5 4,244,440 + HSERO_RS18490 0.89 +0.2 4,244,460 - HSERO_RS18490 0.90 -0.1 4,244,534 + +0.6 4,244,726 + HSERO_RS18495 0.12 -0.2 4,244,726 + HSERO_RS18495 0.12 +0.2 4,244,734 - HSERO_RS18495 0.13 +0.2 4,244,782 + HSERO_RS18495 0.19 -0.1 4,244,841 + HSERO_RS18495 0.26 -0.7 4,244,855 - HSERO_RS18495 0.28 +0.0 4,245,131 - HSERO_RS18495 0.63 +0.3 4,245,241 - HSERO_RS18495 0.77 -0.4 4,245,463 - -1.2 4,245,486 + +0.6 4,245,713 + HSERO_RS18500 0.30 -0.7 4,245,736 - HSERO_RS18500 0.33 -0.8 4,245,844 - HSERO_RS18500 0.44 +0.0 4,246,172 + HSERO_RS18500 0.78 -0.2 4,246,198 + HSERO_RS18500 0.81 +0.3 4,246,258 - HSERO_RS18500 0.87 +1.1 4,246,258 - HSERO_RS18500 0.87 +0.0 4,246,409 - -0.3 4,246,644 + HSERO_RS18505 0.17 -0.1 4,246,883 - HSERO_RS18505 0.33 +0.2 4,246,887 + HSERO_RS18505 0.33 -0.2 4,247,019 + HSERO_RS18505 0.41 -0.5
Or see this region's nucleotide sequence