Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17980 and BWI76_RS17985 are separated by 97 nucleotides BWI76_RS17985 and BWI76_RS17990 are separated by 132 nucleotides BWI76_RS17990 and BWI76_RS17995 overlap by 32 nucleotides
BWI76_RS17980: BWI76_RS17980 - RNA chaperone ProQ, at 3,736,109 to 3,736,792
_RS17980
BWI76_RS17985: BWI76_RS17985 - hypothetical protein, at 3,736,890 to 3,737,387
_RS17985
BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803
_RS17990
BWI76_RS17995: BWI76_RS17995 - hypothetical protein, at 3,738,772 to 3,741,405
_RS17995
Position (kb)
3737
3738
3739 Strain fitness (log2 ratio)
-2
-1
0
1 at 3736.575 kb on - strand, within BWI76_RS17980 at 3736.575 kb on - strand, within BWI76_RS17980 at 3736.582 kb on + strand, within BWI76_RS17980 at 3736.871 kb on + strand at 3736.871 kb on + strand at 3737.128 kb on - strand, within BWI76_RS17985 at 3737.202 kb on + strand, within BWI76_RS17985 at 3737.251 kb on - strand, within BWI76_RS17985 at 3737.363 kb on - strand at 3737.365 kb on + strand at 3737.413 kb on + strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.421 kb on - strand at 3737.492 kb on + strand at 3737.539 kb on + strand at 3737.547 kb on - strand at 3737.596 kb on + strand at 3737.834 kb on - strand, within BWI76_RS17990 at 3737.858 kb on - strand, within BWI76_RS17990 at 3737.986 kb on - strand, within BWI76_RS17990 at 3738.077 kb on + strand, within BWI76_RS17990 at 3738.167 kb on + strand, within BWI76_RS17990 at 3738.563 kb on - strand, within BWI76_RS17990 at 3739.085 kb on - strand, within BWI76_RS17995 at 3739.193 kb on - strand, within BWI76_RS17995 at 3739.349 kb on + strand, within BWI76_RS17995 at 3739.357 kb on - strand, within BWI76_RS17995 at 3739.482 kb on + strand, within BWI76_RS17995 at 3739.666 kb on - strand, within BWI76_RS17995
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 3,736,575 - BWI76_RS17980 0.68 +0.0 3,736,575 - BWI76_RS17980 0.68 +0.5 3,736,582 + BWI76_RS17980 0.69 -1.5 3,736,871 + +0.2 3,736,871 + +0.5 3,737,128 - BWI76_RS17985 0.48 +0.4 3,737,202 + BWI76_RS17985 0.63 +0.1 3,737,251 - BWI76_RS17985 0.72 -0.2 3,737,363 - -0.6 3,737,365 + +0.9 3,737,413 + +0.4 3,737,421 - -0.1 3,737,421 - -0.1 3,737,421 - -1.3 3,737,421 - +0.1 3,737,421 - -0.1 3,737,492 + -0.3 3,737,539 + -1.4 3,737,547 - -0.7 3,737,596 + -0.8 3,737,834 - BWI76_RS17990 0.24 -0.8 3,737,858 - BWI76_RS17990 0.26 -0.8 3,737,986 - BWI76_RS17990 0.36 -2.1 3,738,077 + BWI76_RS17990 0.43 -1.5 3,738,167 + BWI76_RS17990 0.50 -0.4 3,738,563 - BWI76_RS17990 0.81 -0.6 3,739,085 - BWI76_RS17995 0.12 -0.5 3,739,193 - BWI76_RS17995 0.16 -1.0 3,739,349 + BWI76_RS17995 0.22 -0.7 3,739,357 - BWI76_RS17995 0.22 -0.9 3,739,482 + BWI76_RS17995 0.27 -0.3 3,739,666 - BWI76_RS17995 0.34 +0.3
Or see this region's nucleotide sequence