Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12600 and BWI76_RS12605 are separated by 198 nucleotides BWI76_RS12605 and BWI76_RS12610 are separated by 162 nucleotides
BWI76_RS12600: BWI76_RS12600 - MFS transporter, at 2,629,380 to 2,630,501
_RS12600
BWI76_RS12605: BWI76_RS12605 - hypothetical protein, at 2,630,700 to 2,631,836
_RS12605
BWI76_RS12610: BWI76_RS12610 - LysR family transcriptional regulator, at 2,631,999 to 2,632,883
_RS12610
Position (kb)
2630
2631
2632 Strain fitness (log2 ratio)
-2
-1
0
1 at 2629.819 kb on - strand, within BWI76_RS12600 at 2629.864 kb on - strand, within BWI76_RS12600 at 2629.927 kb on + strand, within BWI76_RS12600 at 2630.077 kb on - strand, within BWI76_RS12600 at 2630.215 kb on + strand, within BWI76_RS12600 at 2630.361 kb on + strand, within BWI76_RS12600 at 2630.394 kb on + strand at 2630.402 kb on - strand at 2630.553 kb on + strand at 2630.689 kb on + strand at 2630.763 kb on + strand at 2630.883 kb on - strand, within BWI76_RS12605 at 2631.151 kb on + strand, within BWI76_RS12605 at 2631.177 kb on + strand, within BWI76_RS12605 at 2631.637 kb on - strand, within BWI76_RS12605 at 2631.753 kb on + strand at 2631.778 kb on + strand at 2632.089 kb on - strand, within BWI76_RS12610 at 2632.100 kb on - strand, within BWI76_RS12610 at 2632.723 kb on - strand, within BWI76_RS12610
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 2,629,819 - BWI76_RS12600 0.39 -0.2 2,629,864 - BWI76_RS12600 0.43 +0.0 2,629,927 + BWI76_RS12600 0.49 +0.1 2,630,077 - BWI76_RS12600 0.62 +0.1 2,630,215 + BWI76_RS12600 0.74 -0.9 2,630,361 + BWI76_RS12600 0.87 -0.5 2,630,394 + +0.4 2,630,402 - -0.4 2,630,553 + -0.3 2,630,689 + -0.1 2,630,763 + +0.3 2,630,883 - BWI76_RS12605 0.16 +0.1 2,631,151 + BWI76_RS12605 0.40 -0.4 2,631,177 + BWI76_RS12605 0.42 +0.8 2,631,637 - BWI76_RS12605 0.82 +0.3 2,631,753 + -1.5 2,631,778 + -2.1 2,632,089 - BWI76_RS12610 0.10 -0.5 2,632,100 - BWI76_RS12610 0.11 -2.1 2,632,723 - BWI76_RS12610 0.82 -0.9
Or see this region's nucleotide sequence