Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07375 and BWI76_RS07380 are separated by 37 nucleotides BWI76_RS07380 and BWI76_RS07385 are separated by 127 nucleotides
BWI76_RS07375: BWI76_RS07375 - dehydrogenase, at 1,556,124 to 1,557,275
_RS07375
BWI76_RS07380: BWI76_RS07380 - hypothetical protein, at 1,557,313 to 1,557,729
_RS07380
BWI76_RS07385: BWI76_RS07385 - short-chain dehydrogenase/reductase SDR, at 1,557,857 to 1,558,606
_RS07385
Position (kb)
1557
1558 Strain fitness (log2 ratio)
-1
0
1 at 1556.322 kb on + strand, within BWI76_RS07375 at 1556.413 kb on + strand, within BWI76_RS07375 at 1556.477 kb on - strand, within BWI76_RS07375 at 1556.484 kb on - strand, within BWI76_RS07375 at 1556.641 kb on - strand, within BWI76_RS07375 at 1556.690 kb on + strand, within BWI76_RS07375 at 1557.105 kb on - strand, within BWI76_RS07375 at 1557.318 kb on - strand at 1557.318 kb on - strand at 1557.344 kb on + strand at 1557.362 kb on - strand, within BWI76_RS07380 at 1557.482 kb on - strand, within BWI76_RS07380 at 1557.767 kb on - strand at 1557.772 kb on + strand at 1557.811 kb on - strand at 1557.816 kb on + strand at 1557.824 kb on - strand at 1557.939 kb on + strand at 1558.175 kb on + strand, within BWI76_RS07385 at 1558.394 kb on - strand, within BWI76_RS07385
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 1,556,322 + BWI76_RS07375 0.17 -0.1 1,556,413 + BWI76_RS07375 0.25 -0.6 1,556,477 - BWI76_RS07375 0.31 +0.1 1,556,484 - BWI76_RS07375 0.31 +0.4 1,556,641 - BWI76_RS07375 0.45 -1.1 1,556,690 + BWI76_RS07375 0.49 +0.7 1,557,105 - BWI76_RS07375 0.85 -0.8 1,557,318 - -0.7 1,557,318 - +0.1 1,557,344 + +0.1 1,557,362 - BWI76_RS07380 0.12 +0.9 1,557,482 - BWI76_RS07380 0.41 -0.0 1,557,767 - -0.0 1,557,772 + +0.0 1,557,811 - -0.1 1,557,816 + -0.1 1,557,824 - -0.9 1,557,939 + -0.5 1,558,175 + BWI76_RS07385 0.42 -0.9 1,558,394 - BWI76_RS07385 0.72 +0.1
Or see this region's nucleotide sequence