Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04210 and BWI76_RS04215 are separated by 12 nucleotides BWI76_RS04215 and BWI76_RS04220 overlap by 1 nucleotides BWI76_RS04220 and BWI76_RS04225 are separated by 57 nucleotides
BWI76_RS04210: BWI76_RS04210 - hypothetical protein, at 866,056 to 866,529
_RS04210
BWI76_RS04215: BWI76_RS04215 - DNA-binding response regulator, at 866,542 to 867,231
_RS04215
BWI76_RS04220: BWI76_RS04220 - two-component sensor histidine kinase, at 867,231 to 868,655
_RS04220
BWI76_RS04225: BWI76_RS04225 - cell envelope integrity protein CreD, at 868,713 to 870,071
_RS04225
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1 at 866.247 kb on + strand, within BWI76_RS04210 at 866.258 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.279 kb on + strand, within BWI76_RS04210 at 866.287 kb on - strand, within BWI76_RS04210 at 866.551 kb on + strand at 866.598 kb on + strand at 866.606 kb on - strand at 866.606 kb on - strand at 866.734 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.786 kb on - strand, within BWI76_RS04215 at 866.803 kb on - strand, within BWI76_RS04215 at 867.088 kb on + strand, within BWI76_RS04215 at 867.103 kb on + strand, within BWI76_RS04215 at 867.132 kb on - strand, within BWI76_RS04215 at 867.215 kb on + strand at 867.215 kb on + strand at 867.356 kb on + strand at 867.533 kb on + strand, within BWI76_RS04220 at 867.541 kb on - strand, within BWI76_RS04220 at 867.541 kb on - strand, within BWI76_RS04220 at 867.707 kb on + strand, within BWI76_RS04220 at 867.714 kb on + strand, within BWI76_RS04220 at 867.775 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.928 kb on + strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.936 kb on - strand, within BWI76_RS04220 at 867.948 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 867.970 kb on + strand, within BWI76_RS04220 at 868.189 kb on + strand, within BWI76_RS04220 at 868.269 kb on + strand, within BWI76_RS04220 at 868.438 kb on + strand, within BWI76_RS04220 at 868.679 kb on + strand at 868.749 kb on + strand at 868.759 kb on + strand at 868.843 kb on - strand at 868.848 kb on - strand at 869.085 kb on - strand, within BWI76_RS04225 at 869.121 kb on + strand, within BWI76_RS04225 at 869.144 kb on + strand, within BWI76_RS04225 at 869.336 kb on + strand, within BWI76_RS04225 at 869.456 kb on - strand, within BWI76_RS04225 at 869.486 kb on + strand, within BWI76_RS04225 at 869.580 kb on + strand, within BWI76_RS04225
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 866,247 + BWI76_RS04210 0.40 -0.0 866,258 + BWI76_RS04210 0.43 -0.0 866,279 + BWI76_RS04210 0.47 -0.2 866,279 + BWI76_RS04210 0.47 +0.4 866,287 - BWI76_RS04210 0.49 +0.3 866,551 + -0.3 866,598 + -0.5 866,606 - -0.1 866,606 - +1.0 866,734 - BWI76_RS04215 0.28 -0.1 866,786 - BWI76_RS04215 0.35 -1.7 866,786 - BWI76_RS04215 0.35 +0.3 866,803 - BWI76_RS04215 0.38 +0.1 867,088 + BWI76_RS04215 0.79 -0.6 867,103 + BWI76_RS04215 0.81 -0.3 867,132 - BWI76_RS04215 0.86 +0.4 867,215 + -0.5 867,215 + -0.1 867,356 + +0.3 867,533 + BWI76_RS04220 0.21 -0.6 867,541 - BWI76_RS04220 0.22 -0.3 867,541 - BWI76_RS04220 0.22 -0.3 867,707 + BWI76_RS04220 0.33 -0.2 867,714 + BWI76_RS04220 0.34 -0.5 867,775 + BWI76_RS04220 0.38 -0.6 867,928 + BWI76_RS04220 0.49 -0.3 867,928 + BWI76_RS04220 0.49 -0.2 867,936 - BWI76_RS04220 0.49 -0.5 867,936 - BWI76_RS04220 0.49 -1.0 867,936 - BWI76_RS04220 0.49 +0.1 867,948 + BWI76_RS04220 0.50 +0.1 867,970 + BWI76_RS04220 0.52 +0.1 867,970 + BWI76_RS04220 0.52 +0.3 868,189 + BWI76_RS04220 0.67 -0.3 868,269 + BWI76_RS04220 0.73 -0.0 868,438 + BWI76_RS04220 0.85 -0.4 868,679 + -0.0 868,749 + -1.3 868,759 + -0.8 868,843 - +0.1 868,848 - -0.9 869,085 - BWI76_RS04225 0.27 +0.3 869,121 + BWI76_RS04225 0.30 -0.4 869,144 + BWI76_RS04225 0.32 +0.4 869,336 + BWI76_RS04225 0.46 -1.9 869,456 - BWI76_RS04225 0.55 +0.4 869,486 + BWI76_RS04225 0.57 -0.6 869,580 + BWI76_RS04225 0.64 -0.6
Or see this region's nucleotide sequence