Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03985 and BWI76_RS03990 are separated by 54 nucleotides BWI76_RS03990 and BWI76_RS03995 are separated by 257 nucleotides BWI76_RS03995 and BWI76_RS04000 are separated by 65 nucleotides
BWI76_RS03985: BWI76_RS03985 - ISNCY family transposase, at 824,365 to 825,315
_RS03985
BWI76_RS03990: BWI76_RS03990 - phosphoglycerol transferase I, at 825,370 to 827,661
_RS03990
BWI76_RS03995: BWI76_RS03995 - hypothetical protein, at 827,919 to 828,413
_RS03995
BWI76_RS04000: BWI76_RS04000 - DNA replication protein DnaC, at 828,479 to 829,216
_RS04000
Position (kb) 825
826
827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 824.546 kb on + strand, within BWI76_RS03985 at 824.546 kb on + strand, within BWI76_RS03985 at 824.587 kb on + strand, within BWI76_RS03985 at 824.590 kb on - strand, within BWI76_RS03985 at 824.595 kb on - strand, within BWI76_RS03985 at 824.975 kb on - strand, within BWI76_RS03985 at 824.975 kb on - strand, within BWI76_RS03985 at 825.097 kb on - strand, within BWI76_RS03985 at 825.185 kb on - strand, within BWI76_RS03985 at 825.235 kb on + strand at 825.262 kb on + strand at 825.506 kb on - strand at 825.612 kb on - strand, within BWI76_RS03990 at 825.690 kb on + strand, within BWI76_RS03990 at 825.698 kb on - strand, within BWI76_RS03990 at 825.827 kb on + strand, within BWI76_RS03990 at 825.835 kb on - strand, within BWI76_RS03990 at 825.842 kb on - strand, within BWI76_RS03990 at 826.055 kb on - strand, within BWI76_RS03990 at 826.235 kb on + strand, within BWI76_RS03990 at 826.236 kb on + strand, within BWI76_RS03990 at 826.313 kb on - strand, within BWI76_RS03990 at 826.484 kb on + strand, within BWI76_RS03990 at 826.864 kb on + strand, within BWI76_RS03990 at 826.869 kb on + strand, within BWI76_RS03990 at 826.869 kb on + strand, within BWI76_RS03990 at 826.877 kb on - strand, within BWI76_RS03990 at 826.889 kb on - strand, within BWI76_RS03990 at 826.982 kb on + strand, within BWI76_RS03990 at 827.156 kb on + strand, within BWI76_RS03990 at 827.164 kb on - strand, within BWI76_RS03990 at 827.227 kb on - strand, within BWI76_RS03990 at 827.252 kb on + strand, within BWI76_RS03990 at 827.378 kb on - strand, within BWI76_RS03990 at 827.410 kb on + strand, within BWI76_RS03990 at 827.438 kb on - strand at 827.491 kb on + strand at 827.498 kb on - strand at 827.537 kb on - strand at 827.562 kb on - strand at 827.696 kb on - strand at 827.767 kb on + strand at 827.886 kb on - strand at 827.995 kb on + strand, within BWI76_RS03995 at 828.054 kb on - strand, within BWI76_RS03995 at 828.106 kb on + strand, within BWI76_RS03995 at 828.222 kb on - strand, within BWI76_RS03995 at 828.337 kb on + strand, within BWI76_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 824,546 + BWI76_RS03985 0.19 -0.1 824,546 + BWI76_RS03985 0.19 -0.2 824,587 + BWI76_RS03985 0.23 -0.6 824,590 - BWI76_RS03985 0.24 +0.0 824,595 - BWI76_RS03985 0.24 -0.3 824,975 - BWI76_RS03985 0.64 -0.3 824,975 - BWI76_RS03985 0.64 +0.5 825,097 - BWI76_RS03985 0.77 -0.2 825,185 - BWI76_RS03985 0.86 +0.0 825,235 + -0.1 825,262 + +0.0 825,506 - +0.1 825,612 - BWI76_RS03990 0.11 -0.3 825,690 + BWI76_RS03990 0.14 -4.0 825,698 - BWI76_RS03990 0.14 -0.6 825,827 + BWI76_RS03990 0.20 -0.5 825,835 - BWI76_RS03990 0.20 -0.3 825,842 - BWI76_RS03990 0.21 +0.1 826,055 - BWI76_RS03990 0.30 -0.5 826,235 + BWI76_RS03990 0.38 -1.4 826,236 + BWI76_RS03990 0.38 -0.9 826,313 - BWI76_RS03990 0.41 -2.2 826,484 + BWI76_RS03990 0.49 -1.9 826,864 + BWI76_RS03990 0.65 -1.9 826,869 + BWI76_RS03990 0.65 -1.3 826,869 + BWI76_RS03990 0.65 -1.2 826,877 - BWI76_RS03990 0.66 -0.4 826,889 - BWI76_RS03990 0.66 +0.2 826,982 + BWI76_RS03990 0.70 -0.9 827,156 + BWI76_RS03990 0.78 -2.0 827,164 - BWI76_RS03990 0.78 -0.8 827,227 - BWI76_RS03990 0.81 -0.1 827,252 + BWI76_RS03990 0.82 +1.1 827,378 - BWI76_RS03990 0.88 -0.1 827,410 + BWI76_RS03990 0.89 -0.9 827,438 - +0.0 827,491 + -0.2 827,498 - -1.3 827,537 - -0.0 827,562 - -1.1 827,696 - -0.0 827,767 + -0.3 827,886 - -0.0 827,995 + BWI76_RS03995 0.15 +0.2 828,054 - BWI76_RS03995 0.27 -0.3 828,106 + BWI76_RS03995 0.38 +0.5 828,222 - BWI76_RS03995 0.61 +1.4 828,337 + BWI76_RS03995 0.84 +0.2
Or see this region's nucleotide sequence