Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3003

Experiment: BHIS with Doxycycline hyclate 0.00009765625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Doxycycline hyclate 0.00009765625 mM
3,783,601	-		BT3001	0.71	-1.2
3,783,741	+		BT3001	0.80	-1.1
3,783,741	+		BT3001	0.80	-2.1
3,783,844	-		BT3001	0.86	-1.2
3,783,856	-		BT3001	0.87	+0.4
3,783,856	-		BT3001	0.87	-1.9
3,783,856	-		BT3001	0.87	-0.6
3,783,871	+		BT3001	0.88	+1.4
3,783,909	+				-2.0
3,783,980	+				-1.8
3,783,980	+				+0.2
3,783,980	+				-0.2
3,783,980	+				-1.3
3,783,980	+				-1.9
3,783,981	-				-2.2
3,784,047	+				-1.0
3,784,047	+				-1.4
3,784,048	-				-1.4
3,784,051	+				-1.1
3,784,090	+				+1.4
3,784,090	+				-0.3
3,784,103	-				-0.7
3,784,120	+				-1.1
3,784,120	+				+0.4
3,784,121	-				-1.2
3,784,121	-				+0.0
3,784,124	+				-0.5
3,784,124	+				-0.6
3,784,178	-				-1.2
3,784,239	-				-1.2
3,784,311	-		BT3002	0.14	-1.4
3,784,311	-		BT3002	0.14	-1.0
3,784,314	+		BT3002	0.16	-2.2
3,784,315	-		BT3002	0.16	-0.6
3,784,321	+		BT3002	0.19	-1.6
3,784,328	-		BT3002	0.23	-0.6
3,784,330	+		BT3002	0.24	-0.6
3,784,358	-		BT3002	0.37	-1.2
3,784,362	+		BT3002	0.39	-2.1
3,784,398	+		BT3002	0.57	+0.4
3,784,401	+		BT3002	0.58	-1.5
3,784,467	+				-3.4
3,784,473	+				-0.6
3,784,491	-				-0.4
3,784,495	+				-1.2
3,784,495	+				-1.4
3,784,522	+				-1.7
3,784,524	+				+0.4
3,784,551	+				+0.4
3,784,563	+				-0.8
3,784,578	+				-0.2
3,784,589	+				-0.2
3,784,590	-				-2.2
3,784,612	+				-0.6
3,784,613	-				-1.2
3,784,620	-				-2.0
3,784,620	-				-1.1
3,784,626	-				-0.6
3,784,769	-				-0.5
3,784,848	-		BT3003	0.11	-0.6
3,784,869	-		BT3003	0.12	+0.8
3,784,869	-		BT3003	0.12	-2.5
3,784,870	+		BT3003	0.12	+1.0
3,784,936	+		BT3003	0.15	-0.6
3,784,964	-		BT3003	0.16	+0.4
3,785,012	+		BT3003	0.19	-2.2
3,785,019	+		BT3003	0.19	-1.2
3,785,020	-		BT3003	0.19	-0.6
3,785,063	-		BT3003	0.21	-1.9
3,785,085	+		BT3003	0.22	-1.4
3,785,085	+		BT3003	0.22	-0.3
3,785,085	+		BT3003	0.22	-1.3
3,785,086	-		BT3003	0.22	-2.4
3,785,097	+		BT3003	0.22	-0.8
3,785,097	+		BT3003	0.22	-1.2
3,785,098	-		BT3003	0.22	-1.5
3,785,099	+		BT3003	0.22	-1.5
3,785,116	+		BT3003	0.23	-0.5
3,785,116	+		BT3003	0.23	-2.9
3,785,150	+		BT3003	0.25	+0.4
3,785,150	+		BT3003	0.25	-1.0
3,785,151	-		BT3003	0.25	-1.4
3,785,239	+		BT3003	0.28	-0.8
3,785,239	+		BT3003	0.28	-0.4
3,785,250	-		BT3003	0.29	-0.6
3,785,283	-		BT3003	0.30	-0.6
3,785,283	-		BT3003	0.30	-0.6
3,785,292	+		BT3003	0.31	-1.4
3,785,292	+		BT3003	0.31	+0.8
3,785,301	-		BT3003	0.31	+0.1
3,785,341	+		BT3003	0.33	-1.3
3,785,342	-		BT3003	0.33	-0.6
3,785,346	+		BT3003	0.33	-2.6
3,785,346	+		BT3003	0.33	+0.2
3,785,346	+		BT3003	0.33	-0.4
3,785,352	-		BT3003	0.33	+1.4
3,785,360	-		BT3003	0.34	-0.8
3,785,380	+		BT3003	0.35	-0.8
3,785,383	+		BT3003	0.35	-1.6
3,785,407	+		BT3003	0.36	-0.4
3,785,413	-		BT3003	0.36	-0.9
3,785,413	-		BT3003	0.36	-0.8
3,785,423	+		BT3003	0.37	-1.2
3,785,438	+		BT3003	0.37	-1.2
3,785,447	+		BT3003	0.38	-1.6
3,785,488	+		BT3003	0.39	-1.0
3,785,489	-		BT3003	0.39	-0.3
3,785,508	-		BT3003	0.40	-2.4
3,785,546	+		BT3003	0.42	+0.4
3,785,608	-		BT3003	0.45	-1.6
3,785,610	+		BT3003	0.45	-0.4
3,785,611	-		BT3003	0.45	-1.3
3,785,611	-		BT3003	0.45	-1.9
3,785,612	+		BT3003	0.45	-1.2
3,785,613	-		BT3003	0.45	-0.6
3,785,680	+		BT3003	0.48	+0.4
3,785,680	+		BT3003	0.48	-2.4
3,785,703	-		BT3003	0.49	+0.4
3,785,703	-		BT3003	0.49	-2.5
3,785,708	+		BT3003	0.49	-0.0
3,785,709	-		BT3003	0.49	+0.4
3,785,716	+		BT3003	0.49	+0.6
3,785,738	+		BT3003	0.50	-0.6
3,785,780	+		BT3003	0.52	-1.2
3,785,781	-		BT3003	0.52	-1.4
3,785,783	+		BT3003	0.52	-0.4
3,785,784	-		BT3003	0.52	-1.9
3,785,814	-		BT3003	0.54	+2.0
3,785,961	-		BT3003	0.60	-0.4
3,785,963	+		BT3003	0.60	+0.4
3,785,964	-		BT3003	0.60	-1.4
3,785,994	-		BT3003	0.62	-0.7
3,785,995	+		BT3003	0.62	-0.6
3,785,995	+		BT3003	0.62	-0.6
3,785,999	+		BT3003	0.62	+1.4
3,786,024	-		BT3003	0.63	+1.1
3,786,030	-		BT3003	0.63	-0.5
3,786,064	+		BT3003	0.65	-0.3
3,786,064	+		BT3003	0.65	+0.4
3,786,171	-		BT3003	0.69	-1.2
3,786,176	+		BT3003	0.70	+1.0
3,786,204	-		BT3003	0.71	-0.6
3,786,204	-		BT3003	0.71	-0.6
3,786,204	-		BT3003	0.71	+0.1
3,786,258	+		BT3003	0.73	+0.4
3,786,261	-		BT3003	0.73	-1.6
3,786,286	-		BT3003	0.74	-0.6
3,786,291	-		BT3003	0.75	+0.0
3,786,314	+		BT3003	0.76	-2.2
3,786,323	+		BT3003	0.76	-0.9
3,786,390	+		BT3003	0.79	-0.6
3,786,399	+		BT3003	0.79	+0.2
3,786,412	-		BT3003	0.80	-2.2
3,786,429	+		BT3003	0.81	-1.6
3,786,429	+		BT3003	0.81	-0.9
3,786,430	-		BT3003	0.81	-1.2
3,786,518	+		BT3003	0.85	-1.3
3,786,519	-		BT3003	0.85	-1.1
3,786,554	+		BT3003	0.86	-1.2
3,786,576	-		BT3003	0.87	-2.2
3,786,577	+		BT3003	0.87	-0.6
3,786,577	+		BT3003	0.87	-1.2
3,786,577	+		BT3003	0.87	+1.0
3,786,577	+		BT3003	0.87	-1.2
3,786,578	-		BT3003	0.87	-1.2
3,786,578	-		BT3003	0.87	-1.4
3,786,578	-		BT3003	0.87	-0.9
3,786,585	+		BT3003	0.88	-0.0
3,786,598	+		BT3003	0.88	-0.6
3,786,601	+		BT3003	0.88	-0.6
3,786,602	-		BT3003	0.88	-2.2
3,786,635	+		BT3003	0.90	+0.4
3,786,635	+		BT3003	0.90	+0.3
3,786,641	+		BT3003	0.90	-0.9
3,786,683	+				-0.2
3,786,717	+				-0.8
3,786,743	+				-0.8
3,786,766	+				-2.4
3,786,791	+				-0.6
3,786,815	+				+0.4
3,786,852	-				-1.3
3,786,908	+				-0.8
3,786,909	-				-0.0
3,786,950	+				+0.9
3,786,955	+				-0.6
3,786,957	+				-2.2
3,786,957	+				-0.5
3,786,957	+				+0.4
3,787,059	+				-1.8
3,787,066	+				-2.3
3,787,096	+				+0.4
3,787,096	+				-0.8
3,787,096	+				-0.6
3,787,145	+				-3.2
3,787,195	+				-0.3
3,787,246	+				-1.5
3,787,247	-				-0.6
3,787,285	-				-1.4
3,787,300	+				-0.6
3,787,300	+				-2.2
3,787,300	+				-0.0
3,787,310	+				-1.2
3,787,310	+				-0.3
3,787,310	+				-1.2
3,787,310	+				-0.6
3,787,311	-				-0.2
3,787,312	+				+0.0
3,787,313	-				-0.8
3,787,315	+				-1.6
3,787,316	-				-1.0
3,787,396	+				-0.5
3,787,396	+				-0.1
3,787,571	+				+0.1
3,787,661	-				+0.4
3,787,701	-				+0.4
3,787,702	+				-2.1
3,787,703	-				-2.4
3,787,717	-				+0.4
3,787,719	+				-2.2
3,787,760	-				-0.5
3,787,793	-				-0.6
3,787,847	+				-1.9