Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3275

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3273 and DVU3274 overlap by 1 nucleotidesDVU3274 and DVU3275 overlap by 4 nucleotidesDVU3275 and DVU3276 are separated by 113 nucleotidesDVU3276 and DVU3277 are separated by 82 nucleotidesDVU3277 and htrA are separated by 0 nucleotides DVU3273: DVU3273 - conserved hypothetical protein (TIGR), at 3,450,836 to 3,451,228 DVU3273 DVU3274: DVU3274 - hypothetical protein (TIGR), at 3,451,228 to 3,451,896 DVU3274 DVU3275: DVU3275 - hypothetical protein (TIGR), at 3,451,893 to 3,452,033 DVU3275 DVU3276: DVU3276 - ferredoxin I (TIGR), at 3,452,147 to 3,452,335 DVU3276 DVU3277: DVU3277 - hypothetical protein (TIGR), at 3,452,418 to 3,452,516 DVU3277 DVU3278: htrA - peptidase/PDZ domain protein (TIGR), at 3,452,517 to 3,454,073 htrA Position (kb) 3451 3452 3453Strain fitness (log2 ratio) -2 -1 0 1 2at 3450.991 kb on - strand, within DVU3273at 3451.029 kb on - strand, within DVU3273at 3451.160 kb on + strand, within DVU3273at 3451.195 kb on + strandat 3451.197 kb on + strandat 3451.357 kb on - strand, within DVU3274at 3451.368 kb on - strand, within DVU3274at 3451.380 kb on + strand, within DVU3274at 3452.052 kb on - strandat 3452.067 kb on + strandat 3452.442 kb on + strand, within DVU3277at 3452.449 kb on - strand, within DVU3277at 3452.508 kb on - strandat 3452.589 kb on - strandat 3452.618 kb on + strandat 3452.642 kb on + strandat 3452.665 kb on - strandat 3452.721 kb on - strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.760 kb on - strand, within htrAat 3452.779 kb on + strand, within htrAat 3452.787 kb on - strand, within htrAat 3452.869 kb on + strand, within htrAat 3452.912 kb on + strand, within htrAat 3452.956 kb on - strand, within htrAat 3452.980 kb on + strand, within htrAat 3452.988 kb on - strand, within htrAat 3452.995 kb on - strand, within htrA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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3,450,991 - DVU3273 0.39 -0.1
3,451,029 - DVU3273 0.49 +0.9
3,451,160 + DVU3273 0.82 +0.2
3,451,195 + +0.4
3,451,197 + -0.0
3,451,357 - DVU3274 0.19 +0.1
3,451,368 - DVU3274 0.21 +0.2
3,451,380 + DVU3274 0.23 +0.9
3,452,052 - +0.1
3,452,067 + -0.4
3,452,442 + DVU3277 0.24 -1.6
3,452,449 - DVU3277 0.31 -2.0
3,452,508 - -0.3
3,452,589 - +2.7
3,452,618 + +0.0
3,452,642 + -1.7
3,452,665 - +0.1
3,452,721 - htrA DVU3278 0.13 -0.2
3,452,752 + htrA DVU3278 0.15 +0.1
3,452,752 + htrA DVU3278 0.15 -0.6
3,452,752 + htrA DVU3278 0.15 +0.2
3,452,752 + htrA DVU3278 0.15 +0.2
3,452,760 - htrA DVU3278 0.16 -0.2
3,452,779 + htrA DVU3278 0.17 +1.4
3,452,787 - htrA DVU3278 0.17 -1.8
3,452,869 + htrA DVU3278 0.23 -1.2
3,452,912 + htrA DVU3278 0.25 +0.6
3,452,956 - htrA DVU3278 0.28 -0.1
3,452,980 + htrA DVU3278 0.30 -0.8
3,452,988 - htrA DVU3278 0.30 -0.2
3,452,995 - htrA DVU3278 0.31 +0.9

Or see this region's nucleotide sequence