Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1022

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1021 and DVU1022 are separated by 1 nucleotidesDVU1022 and DVU1023 are separated by 500 nucleotides DVU1021: DVU1021 - conserved hypothetical protein (TIGR), at 1,124,280 to 1,125,446 DVU1021 DVU1022: DVU1022 - SUF system FeS assembly ATPase SufC, putative (TIGR), at 1,125,448 to 1,126,224 DVU1022 DVU1023: DVU1023 - rhomboid family protein (TIGR), at 1,126,725 to 1,127,465 DVU1023 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -1 0 1at 1126.466 kb on + strandat 1126.522 kb on - strandat 1126.560 kb on + strandat 1126.588 kb on - strandat 1126.620 kb on - strandat 1126.660 kb on + strandat 1126.796 kb on + strandat 1126.821 kb on + strand, within DVU1023at 1126.834 kb on - strand, within DVU1023at 1127.088 kb on + strand, within DVU1023at 1127.119 kb on - strand, within DVU1023at 1127.128 kb on + strand, within DVU1023at 1127.138 kb on - strand, within DVU1023at 1127.155 kb on + strand, within DVU1023

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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1,126,466 + -0.0
1,126,522 - -0.0
1,126,560 + +0.2
1,126,588 - -0.0
1,126,620 - +0.3
1,126,660 + -1.0
1,126,796 + -0.8
1,126,821 + DVU1023 0.13 -0.8
1,126,834 - DVU1023 0.15 -0.4
1,127,088 + DVU1023 0.49 +0.9
1,127,119 - DVU1023 0.53 +0.3
1,127,128 + DVU1023 0.54 +0.7
1,127,138 - DVU1023 0.56 -1.6
1,127,155 + DVU1023 0.58 +0.0

Or see this region's nucleotide sequence