Experiment: MoLS4 with Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fragments and DVU0965 are separated by 239 nucleotides DVU0965 and DVU0966 are separated by 94 nucleotides DVU0966 and DVU0967 are separated by 269 nucleotides
DVU0964: fragments - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 1,059,674 to 1,062,667
fragments
DVU0965: DVU0965 - hypothetical protein (TIGR), at 1,062,907 to 1,063,083
DVU0965
DVU0966: DVU0966 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 1,063,178 to 1,063,996
DVU0966
DVU0967: DVU0967 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,064,266 to 1,065,279
DVU0967
Position (kb)
1063
1064 Strain fitness (log2 ratio)
-2
-1
0
1 at 1062.242 kb on - strand, within fragments at 1062.269 kb on + strand, within fragments at 1062.334 kb on - strand, within fragments at 1062.424 kb on + strand at 1062.454 kb on + strand at 1062.705 kb on + strand at 1062.707 kb on + strand at 1062.707 kb on - strand at 1062.754 kb on + strand at 1062.757 kb on - strand at 1062.757 kb on - strand at 1062.897 kb on + strand at 1062.911 kb on - strand at 1062.963 kb on + strand, within DVU0965 at 1063.038 kb on - strand, within DVU0965 at 1063.060 kb on + strand, within DVU0965 at 1063.125 kb on + strand at 1063.126 kb on - strand at 1063.133 kb on - strand at 1063.133 kb on - strand at 1063.133 kb on - strand at 1063.133 kb on - strand at 1063.150 kb on - strand at 1063.184 kb on - strand at 1063.203 kb on - strand at 1063.540 kb on + strand, within DVU0966 at 1063.610 kb on + strand, within DVU0966 at 1063.615 kb on + strand, within DVU0966 at 1063.615 kb on + strand, within DVU0966 at 1063.618 kb on - strand, within DVU0966 at 1063.618 kb on - strand, within DVU0966 at 1063.628 kb on - strand, within DVU0966 at 1063.635 kb on - strand, within DVU0966 at 1063.684 kb on + strand, within DVU0966 at 1063.762 kb on + strand, within DVU0966 at 1063.810 kb on + strand, within DVU0966 at 1063.810 kb on + strand, within DVU0966 at 1063.812 kb on - strand, within DVU0966 at 1063.812 kb on - strand, within DVU0966 at 1063.818 kb on - strand, within DVU0966 at 1063.818 kb on - strand, within DVU0966 at 1064.021 kb on - strand at 1064.026 kb on - strand at 1064.114 kb on + strand at 1064.264 kb on + strand at 1064.274 kb on + strand at 1064.274 kb on + strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.282 kb on - strand at 1064.289 kb on - strand at 1064.304 kb on + strand at 1064.339 kb on - strand at 1064.372 kb on - strand, within DVU0967 at 1064.382 kb on - strand, within DVU0967 at 1064.443 kb on + strand, within DVU0967 at 1064.468 kb on - strand, within DVU0967 at 1064.470 kb on + strand, within DVU0967 at 1064.542 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.549 kb on - strand, within DVU0967 at 1064.661 kb on - strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.666 kb on + strand, within DVU0967 at 1064.673 kb on + strand, within DVU0967 at 1064.674 kb on - strand, within DVU0967 at 1064.752 kb on - strand, within DVU0967 at 1064.852 kb on - strand, within DVU0967 at 1064.852 kb on - strand, within DVU0967 at 1064.876 kb on + strand, within DVU0967 at 1064.982 kb on + strand, within DVU0967
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N) remove 1,062,242 - fragments DVU0964 0.86 +0.3 1,062,269 + fragments DVU0964 0.87 +0.1 1,062,334 - fragments DVU0964 0.89 +0.4 1,062,424 + -0.1 1,062,454 + +0.5 1,062,705 + +0.1 1,062,707 + -0.1 1,062,707 - +0.4 1,062,754 + -1.0 1,062,757 - -0.0 1,062,757 - -0.1 1,062,897 + +0.1 1,062,911 - -0.1 1,062,963 + DVU0965 0.32 +1.0 1,063,038 - DVU0965 0.74 +0.1 1,063,060 + DVU0965 0.86 -2.7 1,063,125 + +0.1 1,063,126 - -0.1 1,063,133 - -0.0 1,063,133 - +0.2 1,063,133 - -0.1 1,063,133 - -0.0 1,063,150 - +0.1 1,063,184 - +1.5 1,063,203 - +0.7 1,063,540 + DVU0966 0.44 +0.9 1,063,610 + DVU0966 0.53 +0.7 1,063,615 + DVU0966 0.53 +0.8 1,063,615 + DVU0966 0.53 +1.2 1,063,618 - DVU0966 0.54 +0.4 1,063,618 - DVU0966 0.54 +0.1 1,063,628 - DVU0966 0.55 +1.4 1,063,635 - DVU0966 0.56 +0.1 1,063,684 + DVU0966 0.62 +0.7 1,063,762 + DVU0966 0.71 +0.5 1,063,810 + DVU0966 0.77 +0.8 1,063,810 + DVU0966 0.77 +0.6 1,063,812 - DVU0966 0.77 +0.7 1,063,812 - DVU0966 0.77 +0.2 1,063,818 - DVU0966 0.78 +0.7 1,063,818 - DVU0966 0.78 +1.0 1,064,021 - +0.2 1,064,026 - +0.2 1,064,114 + -0.4 1,064,264 + +0.4 1,064,274 + +0.3 1,064,274 + +0.5 1,064,282 - +0.2 1,064,282 - +0.6 1,064,282 - +1.1 1,064,282 - +0.4 1,064,282 - +0.6 1,064,282 - +0.9 1,064,289 - +1.1 1,064,304 + +0.7 1,064,339 - +1.0 1,064,372 - DVU0967 0.10 +0.4 1,064,382 - DVU0967 0.11 +1.3 1,064,443 + DVU0967 0.17 +0.5 1,064,468 - DVU0967 0.20 -1.0 1,064,470 + DVU0967 0.20 +0.7 1,064,542 - DVU0967 0.27 +0.7 1,064,549 - DVU0967 0.28 +0.5 1,064,549 - DVU0967 0.28 +1.3 1,064,549 - DVU0967 0.28 +0.5 1,064,661 - DVU0967 0.39 +0.9 1,064,666 + DVU0967 0.39 +0.5 1,064,666 + DVU0967 0.39 +1.0 1,064,666 + DVU0967 0.39 -0.3 1,064,666 + DVU0967 0.39 +1.1 1,064,666 + DVU0967 0.39 +0.9 1,064,673 + DVU0967 0.40 +0.7 1,064,674 - DVU0967 0.40 +1.1 1,064,752 - DVU0967 0.48 -0.2 1,064,852 - DVU0967 0.58 +1.2 1,064,852 - DVU0967 0.58 +1.0 1,064,876 + DVU0967 0.60 +1.0 1,064,982 + DVU0967 0.71 +0.6
Or see this region's nucleotide sequence