Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0966

Experiment: MoLS4 with Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfragments and DVU0965 are separated by 239 nucleotidesDVU0965 and DVU0966 are separated by 94 nucleotidesDVU0966 and DVU0967 are separated by 269 nucleotides DVU0964: fragments - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 1,059,674 to 1,062,667 fragments DVU0965: DVU0965 - hypothetical protein (TIGR), at 1,062,907 to 1,063,083 DVU0965 DVU0966: DVU0966 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 1,063,178 to 1,063,996 DVU0966 DVU0967: DVU0967 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 1,064,266 to 1,065,279 DVU0967 Position (kb) 1063 1064Strain fitness (log2 ratio) -2 -1 0 1at 1062.242 kb on - strand, within fragmentsat 1062.269 kb on + strand, within fragmentsat 1062.334 kb on - strand, within fragmentsat 1062.424 kb on + strandat 1062.454 kb on + strandat 1062.705 kb on + strandat 1062.707 kb on + strandat 1062.707 kb on - strandat 1062.754 kb on + strandat 1062.757 kb on - strandat 1062.757 kb on - strandat 1062.897 kb on + strandat 1062.911 kb on - strandat 1062.963 kb on + strand, within DVU0965at 1063.038 kb on - strand, within DVU0965at 1063.060 kb on + strand, within DVU0965at 1063.125 kb on + strandat 1063.126 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.133 kb on - strandat 1063.150 kb on - strandat 1063.184 kb on - strandat 1063.203 kb on - strandat 1063.540 kb on + strand, within DVU0966at 1063.610 kb on + strand, within DVU0966at 1063.615 kb on + strand, within DVU0966at 1063.615 kb on + strand, within DVU0966at 1063.618 kb on - strand, within DVU0966at 1063.618 kb on - strand, within DVU0966at 1063.628 kb on - strand, within DVU0966at 1063.635 kb on - strand, within DVU0966at 1063.684 kb on + strand, within DVU0966at 1063.762 kb on + strand, within DVU0966at 1063.810 kb on + strand, within DVU0966at 1063.810 kb on + strand, within DVU0966at 1063.812 kb on - strand, within DVU0966at 1063.812 kb on - strand, within DVU0966at 1063.818 kb on - strand, within DVU0966at 1063.818 kb on - strand, within DVU0966at 1064.021 kb on - strandat 1064.026 kb on - strandat 1064.114 kb on + strandat 1064.264 kb on + strandat 1064.274 kb on + strandat 1064.274 kb on + strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.282 kb on - strandat 1064.289 kb on - strandat 1064.304 kb on + strandat 1064.339 kb on - strandat 1064.372 kb on - strand, within DVU0967at 1064.382 kb on - strand, within DVU0967at 1064.443 kb on + strand, within DVU0967at 1064.468 kb on - strand, within DVU0967at 1064.470 kb on + strand, within DVU0967at 1064.542 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.549 kb on - strand, within DVU0967at 1064.661 kb on - strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.666 kb on + strand, within DVU0967at 1064.673 kb on + strand, within DVU0967at 1064.674 kb on - strand, within DVU0967at 1064.752 kb on - strand, within DVU0967at 1064.852 kb on - strand, within DVU0967at 1064.852 kb on - strand, within DVU0967at 1064.876 kb on + strand, within DVU0967at 1064.982 kb on + strand, within DVU0967

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Putrescine (N)
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1,062,242 - fragments DVU0964 0.86 +0.3
1,062,269 + fragments DVU0964 0.87 +0.1
1,062,334 - fragments DVU0964 0.89 +0.4
1,062,424 + -0.1
1,062,454 + +0.5
1,062,705 + +0.1
1,062,707 + -0.1
1,062,707 - +0.4
1,062,754 + -1.0
1,062,757 - -0.0
1,062,757 - -0.1
1,062,897 + +0.1
1,062,911 - -0.1
1,062,963 + DVU0965 0.32 +1.0
1,063,038 - DVU0965 0.74 +0.1
1,063,060 + DVU0965 0.86 -2.7
1,063,125 + +0.1
1,063,126 - -0.1
1,063,133 - -0.0
1,063,133 - +0.2
1,063,133 - -0.1
1,063,133 - -0.0
1,063,150 - +0.1
1,063,184 - +1.5
1,063,203 - +0.7
1,063,540 + DVU0966 0.44 +0.9
1,063,610 + DVU0966 0.53 +0.7
1,063,615 + DVU0966 0.53 +0.8
1,063,615 + DVU0966 0.53 +1.2
1,063,618 - DVU0966 0.54 +0.4
1,063,618 - DVU0966 0.54 +0.1
1,063,628 - DVU0966 0.55 +1.4
1,063,635 - DVU0966 0.56 +0.1
1,063,684 + DVU0966 0.62 +0.7
1,063,762 + DVU0966 0.71 +0.5
1,063,810 + DVU0966 0.77 +0.8
1,063,810 + DVU0966 0.77 +0.6
1,063,812 - DVU0966 0.77 +0.7
1,063,812 - DVU0966 0.77 +0.2
1,063,818 - DVU0966 0.78 +0.7
1,063,818 - DVU0966 0.78 +1.0
1,064,021 - +0.2
1,064,026 - +0.2
1,064,114 + -0.4
1,064,264 + +0.4
1,064,274 + +0.3
1,064,274 + +0.5
1,064,282 - +0.2
1,064,282 - +0.6
1,064,282 - +1.1
1,064,282 - +0.4
1,064,282 - +0.6
1,064,282 - +0.9
1,064,289 - +1.1
1,064,304 + +0.7
1,064,339 - +1.0
1,064,372 - DVU0967 0.10 +0.4
1,064,382 - DVU0967 0.11 +1.3
1,064,443 + DVU0967 0.17 +0.5
1,064,468 - DVU0967 0.20 -1.0
1,064,470 + DVU0967 0.20 +0.7
1,064,542 - DVU0967 0.27 +0.7
1,064,549 - DVU0967 0.28 +0.5
1,064,549 - DVU0967 0.28 +1.3
1,064,549 - DVU0967 0.28 +0.5
1,064,661 - DVU0967 0.39 +0.9
1,064,666 + DVU0967 0.39 +0.5
1,064,666 + DVU0967 0.39 +1.0
1,064,666 + DVU0967 0.39 -0.3
1,064,666 + DVU0967 0.39 +1.1
1,064,666 + DVU0967 0.39 +0.9
1,064,673 + DVU0967 0.40 +0.7
1,064,674 - DVU0967 0.40 +1.1
1,064,752 - DVU0967 0.48 -0.2
1,064,852 - DVU0967 0.58 +1.2
1,064,852 - DVU0967 0.58 +1.0
1,064,876 + DVU0967 0.60 +1.0
1,064,982 + DVU0967 0.71 +0.6

Or see this region's nucleotide sequence