Strain Fitness in Shewanella oneidensis MR-1 around SO2955

Experiment: LB - with RNA protect

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH and SO2954 are separated by 71 nucleotidesSO2954 and SO2955 are separated by 38 nucleotidesSO2955 and SO2956 are separated by 87 nucleotidesSO2956 and SO2957 are separated by 94 nucleotides SO2953: H - prophage LambdaSo, tail length tape meausure protein (NCBI ptt file), at 3,090,474 to 3,093,218 H SO2954: SO2954 - hypothetical protein (NCBI ptt file), at 3,093,290 to 3,093,442 SO2954 SO2955: SO2955 - conserved hypothetical protein (NCBI ptt file), at 3,093,481 to 3,093,975 SO2955 SO2956: SO2956 - prophage LambdaSo, major tail protein V, putative (NCBI ptt file), at 3,094,063 to 3,094,536 SO2956 SO2957: SO2957 - conserved hypothetical protein (NCBI ptt file), at 3,094,631 to 3,094,999 SO2957 Position (kb) 3093 3094Strain fitness (log2 ratio) -1 0 1 2 3at 3092.536 kb on + strand, within Hat 3092.544 kb on - strand, within Hat 3092.675 kb on - strand, within Hat 3092.733 kb on + strand, within Hat 3092.767 kb on + strand, within Hat 3092.907 kb on - strand, within Hat 3092.920 kb on + strand, within Hat 3092.933 kb on - strand, within Hat 3093.139 kb on + strandat 3093.280 kb on - strandat 3093.426 kb on + strand, within SO2954at 3093.461 kb on + strandat 3093.594 kb on + strand, within SO2955at 3093.635 kb on - strand, within SO2955at 3093.870 kb on + strand, within SO2955at 3093.915 kb on + strand, within SO2955at 3094.082 kb on - strandat 3094.166 kb on + strand, within SO2956at 3094.166 kb on + strand, within SO2956at 3094.183 kb on + strand, within SO2956at 3094.340 kb on - strand, within SO2956at 3094.340 kb on - strand, within SO2956at 3094.340 kb on - strand, within SO2956at 3094.376 kb on - strand, within SO2956at 3094.401 kb on - strand, within SO2956at 3094.510 kb on - strandat 3094.510 kb on - strandat 3094.593 kb on - strandat 3094.757 kb on - strand, within SO2957at 3094.759 kb on + strand, within SO2957at 3094.865 kb on + strand, within SO2957at 3094.875 kb on + strand, within SO2957at 3094.875 kb on + strand, within SO2957at 3094.883 kb on - strand, within SO2957at 3094.883 kb on - strand, within SO2957at 3094.900 kb on - strand, within SO2957at 3094.954 kb on + strand, within SO2957at 3094.954 kb on + strand, within SO2957at 3094.962 kb on - strand, within SO2957

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Per-strain Table

Position Strand Gene LocusTag Fraction LB - with RNA protect
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3,092,536 + H SO2953 0.75 +1.6
3,092,544 - H SO2953 0.75 +0.8
3,092,675 - H SO2953 0.80 +2.3
3,092,733 + H SO2953 0.82 +1.0
3,092,767 + H SO2953 0.84 +2.9
3,092,907 - H SO2953 0.89 +1.4
3,092,920 + H SO2953 0.89 +2.0
3,092,933 - H SO2953 0.90 +1.6
3,093,139 + +1.5
3,093,280 - +1.1
3,093,426 + SO2954 0.89 +0.3
3,093,461 + +1.4
3,093,594 + SO2955 0.23 +1.9
3,093,635 - SO2955 0.31 +1.5
3,093,870 + SO2955 0.79 +1.2
3,093,915 + SO2955 0.88 +1.4
3,094,082 - +0.6
3,094,166 + SO2956 0.22 +1.5
3,094,166 + SO2956 0.22 +1.9
3,094,183 + SO2956 0.25 +1.6
3,094,340 - SO2956 0.58 +2.6
3,094,340 - SO2956 0.58 +1.9
3,094,340 - SO2956 0.58 +2.0
3,094,376 - SO2956 0.66 +1.0
3,094,401 - SO2956 0.71 +0.8
3,094,510 - +1.3
3,094,510 - +1.2
3,094,593 - +1.1
3,094,757 - SO2957 0.34 +1.2
3,094,759 + SO2957 0.35 +1.6
3,094,865 + SO2957 0.63 +0.7
3,094,875 + SO2957 0.66 +1.6
3,094,875 + SO2957 0.66 +1.3
3,094,883 - SO2957 0.68 +1.7
3,094,883 - SO2957 0.68 +2.1
3,094,900 - SO2957 0.73 +0.6
3,094,954 + SO2957 0.88 +2.0
3,094,954 + SO2957 0.88 -1.7
3,094,962 - SO2957 0.90 +1.1

Or see this region's nucleotide sequence