Experiment: LB - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2946 and SO2947 are separated by 2 nucleotides SO2947 and SO2948 are separated by 82 nucleotides SO2948 and SO2949 are separated by 51 nucleotides SO2949 and SO2950 overlap by 8 nucleotides
SO2946: SO2946 - hypothetical protein (NCBI ptt file), at 3,084,700 to 3,085,488
SO2946
SO2947: SO2947 - hypothetical protein (NCBI ptt file), at 3,085,491 to 3,085,763
SO2947
SO2948: SO2948 - prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file), at 3,085,846 to 3,086,559
SO2948
SO2949: SO2949 - prophage LambdaSo, minor tail protein L (NCBI ptt file), at 3,086,611 to 3,087,336
SO2949
SO2950: SO2950 - hypothetical protein (NCBI ptt file), at 3,087,329 to 3,087,988
SO2950
Position (kb)
3085
3086
3087 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3084.853 kb on - strand, within SO2946 at 3084.853 kb on - strand, within SO2946 at 3084.857 kb on + strand, within SO2946 at 3084.891 kb on - strand, within SO2946 at 3084.902 kb on - strand, within SO2946 at 3084.902 kb on - strand, within SO2946 at 3084.952 kb on - strand, within SO2946 at 3084.969 kb on - strand, within SO2946 at 3085.094 kb on + strand, within SO2946 at 3085.094 kb on + strand, within SO2946 at 3085.096 kb on + strand, within SO2946 at 3085.154 kb on - strand, within SO2946 at 3085.191 kb on + strand, within SO2946 at 3085.221 kb on - strand, within SO2946 at 3085.234 kb on - strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.305 kb on + strand, within SO2946 at 3085.313 kb on - strand, within SO2946 at 3085.313 kb on - strand, within SO2946 at 3085.402 kb on + strand, within SO2946 at 3085.402 kb on + strand, within SO2946 at 3085.402 kb on - strand, within SO2946 at 3085.445 kb on + strand at 3085.501 kb on + strand at 3085.561 kb on + strand, within SO2947 at 3085.569 kb on - strand, within SO2947 at 3085.596 kb on - strand, within SO2947 at 3085.791 kb on - strand at 3085.918 kb on - strand, within SO2948 at 3085.920 kb on - strand, within SO2948 at 3085.979 kb on - strand, within SO2948 at 3086.080 kb on + strand, within SO2948 at 3086.192 kb on + strand, within SO2948 at 3086.209 kb on + strand, within SO2948 at 3086.219 kb on + strand, within SO2948 at 3086.227 kb on - strand, within SO2948 at 3086.292 kb on - strand, within SO2948 at 3086.372 kb on + strand, within SO2948 at 3086.615 kb on + strand at 3086.638 kb on - strand at 3086.647 kb on + strand at 3086.706 kb on + strand, within SO2949 at 3086.709 kb on - strand, within SO2949 at 3086.715 kb on - strand, within SO2949 at 3086.720 kb on - strand, within SO2949 at 3086.810 kb on - strand, within SO2949 at 3086.876 kb on - strand, within SO2949 at 3086.893 kb on - strand, within SO2949 at 3087.008 kb on + strand, within SO2949 at 3087.019 kb on + strand, within SO2949 at 3087.128 kb on - strand, within SO2949 at 3087.128 kb on - strand, within SO2949 at 3087.138 kb on + strand, within SO2949 at 3087.149 kb on + strand, within SO2949 at 3087.162 kb on - strand, within SO2949 at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.306 kb on + strand at 3087.314 kb on - strand at 3087.314 kb on - strand at 3087.376 kb on + strand at 3087.376 kb on + strand at 3087.383 kb on + strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.384 kb on - strand at 3087.477 kb on - strand, within SO2950 at 3087.477 kb on - strand, within SO2950
Per-strain Table
Position Strand Gene LocusTag Fraction LB - with RNA protect remove 3,084,853 - SO2946 0.19 +0.9 3,084,853 - SO2946 0.19 -0.5 3,084,857 + SO2946 0.20 +1.3 3,084,891 - SO2946 0.24 +1.1 3,084,902 - SO2946 0.26 +0.9 3,084,902 - SO2946 0.26 +0.7 3,084,952 - SO2946 0.32 +0.9 3,084,969 - SO2946 0.34 +0.8 3,085,094 + SO2946 0.50 +0.6 3,085,094 + SO2946 0.50 +1.3 3,085,096 + SO2946 0.50 +1.3 3,085,154 - SO2946 0.58 +0.7 3,085,191 + SO2946 0.62 +0.6 3,085,221 - SO2946 0.66 +0.8 3,085,234 - SO2946 0.68 +0.9 3,085,305 + SO2946 0.77 -0.1 3,085,305 + SO2946 0.77 +1.1 3,085,305 + SO2946 0.77 +1.1 3,085,313 - SO2946 0.78 +0.0 3,085,313 - SO2946 0.78 +0.9 3,085,402 + SO2946 0.89 +1.2 3,085,402 + SO2946 0.89 +1.0 3,085,402 - SO2946 0.89 +0.4 3,085,445 + +1.7 3,085,501 + +1.2 3,085,561 + SO2947 0.26 +1.0 3,085,569 - SO2947 0.29 +1.0 3,085,596 - SO2947 0.38 +1.3 3,085,791 - +1.5 3,085,918 - SO2948 0.10 +1.9 3,085,920 - SO2948 0.10 +0.9 3,085,979 - SO2948 0.19 +1.2 3,086,080 + SO2948 0.33 -0.2 3,086,192 + SO2948 0.48 +0.9 3,086,209 + SO2948 0.51 +1.2 3,086,219 + SO2948 0.52 +2.0 3,086,227 - SO2948 0.53 +1.7 3,086,292 - SO2948 0.62 +1.4 3,086,372 + SO2948 0.74 +1.4 3,086,615 + +0.8 3,086,638 - +1.6 3,086,647 + +1.0 3,086,706 + SO2949 0.13 +0.1 3,086,709 - SO2949 0.13 -0.4 3,086,715 - SO2949 0.14 -0.4 3,086,720 - SO2949 0.15 +0.4 3,086,810 - SO2949 0.27 +2.0 3,086,876 - SO2949 0.37 +2.9 3,086,893 - SO2949 0.39 +1.5 3,087,008 + SO2949 0.55 +0.1 3,087,019 + SO2949 0.56 +2.6 3,087,128 - SO2949 0.71 +1.3 3,087,128 - SO2949 0.71 +1.2 3,087,138 + SO2949 0.73 +1.6 3,087,149 + SO2949 0.74 +1.3 3,087,162 - SO2949 0.76 +1.7 3,087,306 + +1.5 3,087,306 + +0.9 3,087,306 + +0.9 3,087,306 + +2.8 3,087,306 + +1.6 3,087,314 - +0.9 3,087,314 - +1.8 3,087,376 + +0.7 3,087,376 + +0.6 3,087,383 + +0.6 3,087,384 - -0.1 3,087,384 - +0.8 3,087,384 - +0.8 3,087,384 - -0.9 3,087,477 - SO2950 0.22 +1.5 3,087,477 - SO2950 0.22 +1.3
Or see this region's nucleotide sequence