Experiment: LB - with RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0663 and SO0664 are separated by 2 nucleotides SO0664 and SO0665 overlap by 11 nucleotides SO0665 and SO0666 overlap by 1 nucleotides SO0666 and SO0667 overlap by 1 nucleotides
SO0663: SO0663 - conserved hypothetical protein (NCBI ptt file), at 682,412 to 682,708
SO0663
SO0664: SO0664 - hypothetical protein (NCBI ptt file), at 682,711 to 682,983
SO0664
SO0665: SO0665 - conserved hypothetical protein (NCBI ptt file), at 682,973 to 683,539
SO0665
SO0666: SO0666 - prophage MuSo1, portal protein, putative (NCBI ptt file), at 683,539 to 685,179
SO0666
SO0667: SO0667 - conserved hypothetical protein (NCBI ptt file), at 685,179 to 686,780
SO0667
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 682.655 kb on + strand, within SO0663 at 682.800 kb on + strand, within SO0664 at 682.838 kb on - strand, within SO0664 at 682.865 kb on - strand, within SO0664 at 682.890 kb on + strand, within SO0664 at 683.003 kb on + strand at 683.044 kb on - strand, within SO0665 at 683.148 kb on - strand, within SO0665 at 683.173 kb on + strand, within SO0665 at 683.181 kb on - strand, within SO0665 at 683.237 kb on - strand, within SO0665 at 683.242 kb on - strand, within SO0665 at 683.340 kb on + strand, within SO0665 at 683.348 kb on - strand, within SO0665 at 683.358 kb on - strand, within SO0665 at 683.426 kb on + strand, within SO0665 at 683.483 kb on + strand at 683.491 kb on - strand at 683.491 kb on - strand at 683.491 kb on - strand at 683.737 kb on + strand, within SO0666 at 683.770 kb on - strand, within SO0666 at 683.794 kb on - strand, within SO0666 at 683.947 kb on + strand, within SO0666 at 683.947 kb on + strand, within SO0666 at 683.954 kb on - strand, within SO0666 at 683.955 kb on - strand, within SO0666 at 683.955 kb on - strand, within SO0666 at 683.955 kb on - strand, within SO0666 at 684.067 kb on + strand, within SO0666 at 684.067 kb on + strand, within SO0666 at 684.081 kb on + strand, within SO0666 at 684.089 kb on - strand, within SO0666 at 684.113 kb on + strand, within SO0666 at 684.121 kb on - strand, within SO0666 at 684.199 kb on + strand, within SO0666 at 684.234 kb on - strand, within SO0666 at 684.277 kb on + strand, within SO0666 at 684.293 kb on - strand, within SO0666 at 684.321 kb on + strand, within SO0666 at 684.321 kb on + strand, within SO0666 at 684.321 kb on + strand, within SO0666 at 684.321 kb on + strand, within SO0666 at 684.396 kb on + strand, within SO0666 at 684.431 kb on + strand, within SO0666 at 684.439 kb on - strand, within SO0666 at 684.439 kb on - strand, within SO0666 at 684.439 kb on - strand, within SO0666 at 684.439 kb on - strand, within SO0666 at 684.454 kb on - strand, within SO0666 at 684.461 kb on - strand, within SO0666 at 684.498 kb on + strand, within SO0666 at 684.506 kb on - strand, within SO0666 at 684.506 kb on - strand, within SO0666 at 684.516 kb on - strand, within SO0666 at 684.552 kb on + strand, within SO0666 at 684.560 kb on - strand, within SO0666 at 684.611 kb on + strand, within SO0666 at 684.723 kb on - strand, within SO0666 at 684.732 kb on - strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.815 kb on + strand, within SO0666 at 684.823 kb on - strand, within SO0666 at 684.823 kb on - strand, within SO0666 at 684.823 kb on - strand, within SO0666 at 684.823 kb on - strand, within SO0666 at 684.946 kb on - strand, within SO0666 at 685.103 kb on - strand at 685.110 kb on - strand at 685.228 kb on + strand at 685.228 kb on + strand at 685.236 kb on - strand at 685.236 kb on - strand at 685.236 kb on - strand at 685.236 kb on - strand at 685.236 kb on - strand at 685.243 kb on + strand at 685.276 kb on + strand at 685.318 kb on + strand at 685.327 kb on - strand at 685.344 kb on + strand, within SO0667 at 685.432 kb on + strand, within SO0667 at 685.474 kb on + strand, within SO0667 at 685.511 kb on + strand, within SO0667 at 685.599 kb on + strand, within SO0667 at 685.622 kb on - strand, within SO0667 at 685.623 kb on - strand, within SO0667 at 685.638 kb on + strand, within SO0667 at 685.682 kb on - strand, within SO0667 at 685.711 kb on + strand, within SO0667 at 685.775 kb on + strand, within SO0667 at 685.906 kb on + strand, within SO0667 at 685.911 kb on + strand, within SO0667 at 685.911 kb on + strand, within SO0667 at 685.973 kb on - strand, within SO0667 at 686.048 kb on - strand, within SO0667 at 686.084 kb on + strand, within SO0667 at 686.159 kb on - strand, within SO0667 at 686.179 kb on + strand, within SO0667 at 686.179 kb on + strand, within SO0667 at 686.179 kb on + strand, within SO0667
Per-strain Table
Position Strand Gene LocusTag Fraction LB - with RNA protect remove 682,655 + SO0663 0.82 +0.4 682,800 + SO0664 0.33 -1.3 682,838 - SO0664 0.47 -0.8 682,865 - SO0664 0.56 -0.2 682,890 + SO0664 0.66 +0.7 683,003 + +0.1 683,044 - SO0665 0.13 +0.7 683,148 - SO0665 0.31 +1.2 683,173 + SO0665 0.35 -2.1 683,181 - SO0665 0.37 -0.5 683,237 - SO0665 0.47 +0.1 683,242 - SO0665 0.47 +1.7 683,340 + SO0665 0.65 -0.5 683,348 - SO0665 0.66 -0.1 683,358 - SO0665 0.68 -1.2 683,426 + SO0665 0.80 -0.0 683,483 + -0.5 683,491 - +0.3 683,491 - -0.2 683,491 - -0.3 683,737 + SO0666 0.12 +0.1 683,770 - SO0666 0.14 -0.2 683,794 - SO0666 0.16 +0.1 683,947 + SO0666 0.25 +0.6 683,947 + SO0666 0.25 +1.0 683,954 - SO0666 0.25 +0.9 683,955 - SO0666 0.25 -0.3 683,955 - SO0666 0.25 +0.8 683,955 - SO0666 0.25 +0.5 684,067 + SO0666 0.32 +0.5 684,067 + SO0666 0.32 +0.3 684,081 + SO0666 0.33 +0.7 684,089 - SO0666 0.34 +0.7 684,113 + SO0666 0.35 +1.6 684,121 - SO0666 0.35 -2.9 684,199 + SO0666 0.40 +1.5 684,234 - SO0666 0.42 +0.9 684,277 + SO0666 0.45 +0.7 684,293 - SO0666 0.46 +0.2 684,321 + SO0666 0.48 +0.3 684,321 + SO0666 0.48 +1.0 684,321 + SO0666 0.48 -0.3 684,321 + SO0666 0.48 -0.3 684,396 + SO0666 0.52 +0.4 684,431 + SO0666 0.54 -0.1 684,439 - SO0666 0.55 -0.6 684,439 - SO0666 0.55 -0.4 684,439 - SO0666 0.55 -1.8 684,439 - SO0666 0.55 +0.3 684,454 - SO0666 0.56 +1.2 684,461 - SO0666 0.56 -0.3 684,498 + SO0666 0.58 +0.5 684,506 - SO0666 0.59 +0.1 684,506 - SO0666 0.59 -1.0 684,516 - SO0666 0.60 -1.3 684,552 + SO0666 0.62 +0.2 684,560 - SO0666 0.62 -1.0 684,611 + SO0666 0.65 +0.6 684,723 - SO0666 0.72 +1.7 684,732 - SO0666 0.73 +0.0 684,815 + SO0666 0.78 +0.6 684,815 + SO0666 0.78 +0.6 684,815 + SO0666 0.78 -0.8 684,815 + SO0666 0.78 -0.4 684,815 + SO0666 0.78 -0.5 684,815 + SO0666 0.78 +0.5 684,823 - SO0666 0.78 +0.4 684,823 - SO0666 0.78 +1.7 684,823 - SO0666 0.78 +0.5 684,823 - SO0666 0.78 +0.4 684,946 - SO0666 0.86 +0.4 685,103 - -0.1 685,110 - +0.3 685,228 + -0.3 685,228 + -0.1 685,236 - -0.6 685,236 - +0.9 685,236 - +0.6 685,236 - +0.5 685,236 - -0.1 685,243 + -0.6 685,276 + +0.1 685,318 + +1.4 685,327 - +0.2 685,344 + SO0667 0.10 -1.5 685,432 + SO0667 0.16 +0.5 685,474 + SO0667 0.18 +0.2 685,511 + SO0667 0.21 +0.7 685,599 + SO0667 0.26 -1.0 685,622 - SO0667 0.28 +0.2 685,623 - SO0667 0.28 +0.1 685,638 + SO0667 0.29 +1.4 685,682 - SO0667 0.31 +0.2 685,711 + SO0667 0.33 -1.4 685,775 + SO0667 0.37 -1.1 685,906 + SO0667 0.45 +0.1 685,911 + SO0667 0.46 +0.0 685,911 + SO0667 0.46 -0.7 685,973 - SO0667 0.50 -0.0 686,048 - SO0667 0.54 -0.1 686,084 + SO0667 0.56 +0.1 686,159 - SO0667 0.61 -0.6 686,179 + SO0667 0.62 -1.8 686,179 + SO0667 0.62 -0.2 686,179 + SO0667 0.62 -1.1
Or see this region's nucleotide sequence