Experiment: BG11 with Polymyxin B sulfate 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0688 and Synpcc7942_0689 overlap by 10 nucleotides Synpcc7942_0689 and clpS overlap by 17 nucleotides clpS and Synpcc7942_0691 are separated by 134 nucleotides Synpcc7942_0691 and Synpcc7942_0692 overlap by 4 nucleotides
Synpcc7942_0688: Synpcc7942_0688 - transcriptional regulator, ArsR family, at 683,722 to 684,060
_0688
Synpcc7942_0689: Synpcc7942_0689 - hypothetical protein, at 684,051 to 684,884
_0689
Synpcc7942_0690: clpS - ATP-dependent Clp protease adaptor protein ClpS, at 684,868 to 685,155
clpS
Synpcc7942_0691: Synpcc7942_0691 - hypothetical protein, at 685,290 to 685,634
_0691
Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185
_0692
Position (kb) 684
685
686 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 683.886 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.897 kb on + strand, within Synpcc7942_0688 at 683.923 kb on - strand, within Synpcc7942_0688 at 683.926 kb on + strand, within Synpcc7942_0688 at 683.940 kb on - strand, within Synpcc7942_0688 at 683.944 kb on + strand, within Synpcc7942_0688 at 683.975 kb on + strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 683.983 kb on - strand, within Synpcc7942_0688 at 684.001 kb on - strand, within Synpcc7942_0688 at 684.020 kb on + strand, within Synpcc7942_0688 at 684.024 kb on + strand, within Synpcc7942_0688 at 684.028 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.103 kb on - strand at 684.108 kb on - strand at 684.108 kb on - strand at 684.844 kb on + strand at 684.844 kb on + strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.852 kb on - strand at 684.855 kb on - strand at 684.879 kb on + strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.887 kb on - strand at 684.895 kb on - strand at 684.905 kb on - strand, within clpS at 684.954 kb on + strand, within clpS at 684.994 kb on + strand, within clpS at 685.001 kb on + strand, within clpS at 685.020 kb on - strand, within clpS at 685.028 kb on + strand, within clpS at 685.036 kb on - strand, within clpS at 685.041 kb on - strand, within clpS at 685.049 kb on + strand, within clpS at 685.324 kb on + strand at 685.332 kb on - strand, within Synpcc7942_0691 at 685.332 kb on - strand, within Synpcc7942_0691 at 685.343 kb on + strand, within Synpcc7942_0691 at 685.351 kb on - strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.446 kb on - strand, within Synpcc7942_0691 at 685.458 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.495 kb on + strand, within Synpcc7942_0691 at 685.502 kb on + strand, within Synpcc7942_0691 at 685.504 kb on + strand, within Synpcc7942_0691 at 685.512 kb on - strand, within Synpcc7942_0691 at 685.514 kb on + strand, within Synpcc7942_0691 at 685.523 kb on - strand, within Synpcc7942_0691 at 685.562 kb on + strand, within Synpcc7942_0691 at 685.563 kb on + strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.573 kb on + strand, within Synpcc7942_0691 at 685.578 kb on + strand, within Synpcc7942_0691 at 685.592 kb on - strand, within Synpcc7942_0691 at 685.637 kb on - strand at 685.640 kb on + strand at 685.654 kb on + strand at 685.660 kb on + strand at 685.664 kb on + strand at 685.667 kb on - strand at 685.672 kb on - strand at 685.682 kb on + strand at 685.689 kb on - strand, within Synpcc7942_0692 at 685.689 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.705 kb on + strand at 685.708 kb on - strand, within Synpcc7942_0692 at 685.716 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.804 kb on + strand, within Synpcc7942_0692 at 685.872 kb on + strand, within Synpcc7942_0692 at 685.880 kb on - strand, within Synpcc7942_0692 at 685.886 kb on - strand, within Synpcc7942_0692 at 685.918 kb on + strand, within Synpcc7942_0692 at 685.957 kb on + strand, within Synpcc7942_0692 at 685.965 kb on - strand, within Synpcc7942_0692 at 686.041 kb on - strand, within Synpcc7942_0692 at 686.047 kb on - strand, within Synpcc7942_0692 at 686.048 kb on + strand, within Synpcc7942_0692 at 686.060 kb on - strand, within Synpcc7942_0692 at 686.112 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.122 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.138 kb on - strand at 686.138 kb on - strand at 686.139 kb on - strand at 686.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.000390625 mg/ml remove 683,886 + Synpcc7942_0688 0.48 +1.0 683,897 + Synpcc7942_0688 0.52 +2.3 683,897 + Synpcc7942_0688 0.52 +0.2 683,897 + Synpcc7942_0688 0.52 -1.6 683,923 - Synpcc7942_0688 0.59 +0.1 683,926 + Synpcc7942_0688 0.60 +1.3 683,940 - Synpcc7942_0688 0.64 +0.7 683,944 + Synpcc7942_0688 0.65 +0.1 683,975 + Synpcc7942_0688 0.75 -0.9 683,983 - Synpcc7942_0688 0.77 -1.2 683,983 - Synpcc7942_0688 0.77 -3.1 683,983 - Synpcc7942_0688 0.77 +0.3 683,983 - Synpcc7942_0688 0.77 +0.2 684,001 - Synpcc7942_0688 0.82 -3.4 684,020 + Synpcc7942_0688 0.88 -0.7 684,024 + Synpcc7942_0688 0.89 +1.0 684,028 - -0.3 684,103 - -0.6 684,103 - -2.9 684,103 - -0.3 684,103 - +0.5 684,108 - -1.8 684,108 - -0.5 684,844 + +0.2 684,844 + -0.5 684,852 - +0.4 684,852 - +0.9 684,852 - -0.6 684,855 - -1.0 684,879 + -0.4 684,887 - -2.0 684,887 - -1.6 684,887 - -2.1 684,887 - +0.1 684,887 - -0.9 684,895 - -0.0 684,905 - clpS Synpcc7942_0690 0.13 -1.8 684,954 + clpS Synpcc7942_0690 0.30 -1.5 684,994 + clpS Synpcc7942_0690 0.44 -3.0 685,001 + clpS Synpcc7942_0690 0.46 -2.0 685,020 - clpS Synpcc7942_0690 0.53 -4.5 685,028 + clpS Synpcc7942_0690 0.56 +0.0 685,036 - clpS Synpcc7942_0690 0.58 -1.1 685,041 - clpS Synpcc7942_0690 0.60 -5.0 685,049 + clpS Synpcc7942_0690 0.63 -1.0 685,324 + -2.4 685,332 - Synpcc7942_0691 0.12 +0.4 685,332 - Synpcc7942_0691 0.12 +0.1 685,343 + Synpcc7942_0691 0.15 -0.7 685,351 - Synpcc7942_0691 0.18 -1.9 685,420 + Synpcc7942_0691 0.38 -1.5 685,420 + Synpcc7942_0691 0.38 -0.4 685,428 - Synpcc7942_0691 0.40 +0.2 685,428 - Synpcc7942_0691 0.40 +0.1 685,446 - Synpcc7942_0691 0.45 -0.8 685,458 + Synpcc7942_0691 0.49 -0.5 685,494 + Synpcc7942_0691 0.59 +0.1 685,494 + Synpcc7942_0691 0.59 -0.6 685,494 + Synpcc7942_0691 0.59 -0.1 685,495 + Synpcc7942_0691 0.59 -1.7 685,502 + Synpcc7942_0691 0.61 -1.2 685,504 + Synpcc7942_0691 0.62 -0.3 685,512 - Synpcc7942_0691 0.64 +0.6 685,514 + Synpcc7942_0691 0.65 -0.0 685,523 - Synpcc7942_0691 0.68 -0.4 685,562 + Synpcc7942_0691 0.79 +0.1 685,563 + Synpcc7942_0691 0.79 -0.2 685,571 - Synpcc7942_0691 0.81 -0.4 685,571 - Synpcc7942_0691 0.81 -1.2 685,573 + Synpcc7942_0691 0.82 -1.1 685,578 + Synpcc7942_0691 0.83 -0.8 685,592 - Synpcc7942_0691 0.88 -0.8 685,637 - -0.4 685,640 + -0.6 685,654 + +1.0 685,660 + +0.2 685,664 + +1.3 685,667 - -0.4 685,672 - +0.1 685,682 + -0.3 685,689 - Synpcc7942_0692 0.10 +2.0 685,689 - Synpcc7942_0692 0.10 -2.2 685,690 - Synpcc7942_0692 0.11 +0.1 685,690 - Synpcc7942_0692 0.11 -1.5 685,705 + -0.6 685,708 - Synpcc7942_0692 0.14 -1.2 685,716 + Synpcc7942_0692 0.15 -1.2 685,725 + Synpcc7942_0692 0.17 +0.4 685,725 + Synpcc7942_0692 0.17 -1.9 685,804 + Synpcc7942_0692 0.31 +0.1 685,872 + Synpcc7942_0692 0.43 -0.2 685,880 - Synpcc7942_0692 0.45 -0.1 685,886 - Synpcc7942_0692 0.46 -1.3 685,918 + Synpcc7942_0692 0.52 +0.6 685,957 + Synpcc7942_0692 0.59 +0.6 685,965 - Synpcc7942_0692 0.60 -0.6 686,041 - Synpcc7942_0692 0.74 -0.5 686,047 - Synpcc7942_0692 0.75 -0.5 686,048 + Synpcc7942_0692 0.75 +1.1 686,060 - Synpcc7942_0692 0.77 -0.7 686,112 + Synpcc7942_0692 0.87 -1.0 686,120 + Synpcc7942_0692 0.88 +0.3 686,120 + Synpcc7942_0692 0.88 +0.3 686,122 - Synpcc7942_0692 0.88 +0.1 686,128 - Synpcc7942_0692 0.90 -1.0 686,128 - Synpcc7942_0692 0.90 +0.8 686,138 - -0.1 686,138 - -1.4 686,139 - -1.2 686,140 - -1.0
Or see this region's nucleotide sequence