Experiment: BG11 with Polymyxin B sulfate 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0664 and Synpcc7942_0665 are separated by 7 nucleotides Synpcc7942_0665 and Synpcc7942_0666 are separated by 162 nucleotides Synpcc7942_0666 and Synpcc7942_0667 are separated by 223 nucleotides Synpcc7942_0667 and Synpcc7942_0668 are separated by 9 nucleotides Synpcc7942_0668 and mpg are separated by 93 nucleotides
Synpcc7942_0664: Synpcc7942_0664 - Cyclic nucleotide-binding, at 660,875 to 662,224
_0664
Synpcc7942_0665: Synpcc7942_0665 - hypothetical protein, at 662,232 to 662,978
_0665
Synpcc7942_0666: Synpcc7942_0666 - Heat shock protein DnaJ-like, at 663,141 to 663,761
_0666
Synpcc7942_0667: Synpcc7942_0667 - hypothetical protein, at 663,985 to 664,296
_0667
Synpcc7942_0668: Synpcc7942_0668 - hypothetical protein, at 664,306 to 664,446
_0668
Synpcc7942_0669: mpg - DNA-3-methyladenine glycosylase, at 664,540 to 665,124
mpg
Position (kb) 663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 662.155 kb on - strand at 662.155 kb on - strand at 662.173 kb on + strand at 662.198 kb on + strand at 662.265 kb on + strand at 662.269 kb on + strand at 662.324 kb on - strand, within Synpcc7942_0665 at 662.350 kb on + strand, within Synpcc7942_0665 at 662.350 kb on + strand at 662.355 kb on - strand, within Synpcc7942_0665 at 662.394 kb on + strand, within Synpcc7942_0665 at 662.395 kb on + strand, within Synpcc7942_0665 at 662.402 kb on - strand, within Synpcc7942_0665 at 662.402 kb on - strand, within Synpcc7942_0665 at 662.429 kb on - strand, within Synpcc7942_0665 at 662.430 kb on - strand, within Synpcc7942_0665 at 662.430 kb on - strand, within Synpcc7942_0665 at 662.432 kb on + strand, within Synpcc7942_0665 at 662.445 kb on - strand, within Synpcc7942_0665 at 662.497 kb on + strand, within Synpcc7942_0665 at 662.512 kb on - strand, within Synpcc7942_0665 at 662.515 kb on + strand, within Synpcc7942_0665 at 662.515 kb on + strand, within Synpcc7942_0665 at 662.523 kb on - strand, within Synpcc7942_0665 at 662.534 kb on + strand, within Synpcc7942_0665 at 662.534 kb on + strand, within Synpcc7942_0665 at 662.542 kb on - strand, within Synpcc7942_0665 at 662.549 kb on + strand, within Synpcc7942_0665 at 662.571 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.573 kb on + strand, within Synpcc7942_0665 at 662.581 kb on - strand, within Synpcc7942_0665 at 662.581 kb on - strand, within Synpcc7942_0665 at 662.600 kb on - strand, within Synpcc7942_0665 at 662.610 kb on - strand, within Synpcc7942_0665 at 662.622 kb on + strand, within Synpcc7942_0665 at 662.638 kb on + strand at 662.672 kb on + strand at 662.680 kb on - strand, within Synpcc7942_0665 at 662.703 kb on - strand, within Synpcc7942_0665 at 662.736 kb on - strand, within Synpcc7942_0665 at 662.769 kb on + strand, within Synpcc7942_0665 at 662.776 kb on + strand, within Synpcc7942_0665 at 662.776 kb on + strand, within Synpcc7942_0665 at 662.784 kb on - strand, within Synpcc7942_0665 at 662.803 kb on + strand, within Synpcc7942_0665 at 662.810 kb on - strand, within Synpcc7942_0665 at 662.821 kb on - strand, within Synpcc7942_0665 at 662.828 kb on + strand, within Synpcc7942_0665 at 662.868 kb on + strand, within Synpcc7942_0665 at 662.889 kb on + strand, within Synpcc7942_0665 at 662.894 kb on + strand, within Synpcc7942_0665 at 662.894 kb on + strand, within Synpcc7942_0665 at 662.899 kb on - strand, within Synpcc7942_0665 at 662.899 kb on - strand, within Synpcc7942_0665 at 662.902 kb on - strand, within Synpcc7942_0665 at 662.928 kb on - strand at 662.930 kb on + strand at 662.930 kb on + strand at 662.938 kb on - strand at 662.965 kb on - strand at 662.965 kb on - strand at 662.998 kb on - strand at 663.112 kb on + strand at 663.119 kb on + strand at 663.128 kb on - strand at 663.153 kb on + strand at 663.166 kb on - strand at 663.185 kb on + strand at 663.254 kb on + strand, within Synpcc7942_0666 at 663.280 kb on + strand, within Synpcc7942_0666 at 663.310 kb on - strand, within Synpcc7942_0666 at 663.332 kb on + strand, within Synpcc7942_0666 at 663.382 kb on + strand, within Synpcc7942_0666 at 663.389 kb on + strand, within Synpcc7942_0666 at 663.389 kb on - strand, within Synpcc7942_0666 at 663.390 kb on - strand, within Synpcc7942_0666 at 663.390 kb on - strand, within Synpcc7942_0666 at 663.419 kb on - strand, within Synpcc7942_0666 at 663.468 kb on - strand, within Synpcc7942_0666 at 663.501 kb on - strand, within Synpcc7942_0666 at 663.524 kb on + strand, within Synpcc7942_0666 at 663.533 kb on - strand, within Synpcc7942_0666 at 663.576 kb on - strand, within Synpcc7942_0666 at 663.577 kb on + strand, within Synpcc7942_0666 at 663.580 kb on + strand, within Synpcc7942_0666 at 663.598 kb on + strand, within Synpcc7942_0666 at 663.599 kb on - strand, within Synpcc7942_0666 at 663.613 kb on + strand, within Synpcc7942_0666 at 663.621 kb on - strand, within Synpcc7942_0666 at 663.685 kb on + strand, within Synpcc7942_0666 at 663.688 kb on - strand at 663.697 kb on + strand, within Synpcc7942_0666 at 663.700 kb on - strand at 663.763 kb on - strand at 663.802 kb on + strand at 663.810 kb on - strand at 663.810 kb on - strand at 663.812 kb on - strand at 663.817 kb on + strand at 663.817 kb on + strand at 663.827 kb on + strand at 663.835 kb on - strand at 663.857 kb on - strand at 663.857 kb on - strand at 663.860 kb on - strand at 663.882 kb on - strand at 663.882 kb on - strand at 663.897 kb on + strand at 663.897 kb on + strand at 663.933 kb on + strand at 663.941 kb on - strand at 663.969 kb on + strand at 663.977 kb on - strand at 664.011 kb on + strand at 664.038 kb on - strand, within Synpcc7942_0667 at 664.046 kb on - strand, within Synpcc7942_0667 at 664.061 kb on + strand, within Synpcc7942_0667 at 664.100 kb on + strand, within Synpcc7942_0667 at 664.172 kb on + strand, within Synpcc7942_0667 at 664.258 kb on + strand, within Synpcc7942_0667 at 664.306 kb on + strand at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.384 kb on + strand, within Synpcc7942_0668 at 664.392 kb on - strand, within Synpcc7942_0668 at 664.393 kb on - strand, within Synpcc7942_0668 at 664.454 kb on + strand at 664.454 kb on + strand at 664.454 kb on + strand at 664.462 kb on - strand at 664.473 kb on + strand at 664.478 kb on + strand at 664.577 kb on + strand at 664.600 kb on + strand, within mpg at 664.618 kb on - strand, within mpg at 664.636 kb on + strand, within mpg at 664.660 kb on + strand, within mpg at 664.695 kb on - strand at 664.697 kb on + strand, within mpg at 664.697 kb on + strand, within mpg at 664.699 kb on + strand, within mpg at 664.705 kb on - strand, within mpg at 664.720 kb on + strand, within mpg at 664.745 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg at 664.755 kb on + strand, within mpg
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.000390625 mg/ml remove 662,155 - +0.6 662,155 - +0.6 662,173 + +0.1 662,198 + -1.8 662,265 + +0.4 662,269 + +1.1 662,324 - Synpcc7942_0665 0.12 -2.6 662,350 + Synpcc7942_0665 0.16 -2.9 662,350 + +0.4 662,355 - Synpcc7942_0665 0.16 +0.2 662,394 + Synpcc7942_0665 0.22 -1.1 662,395 + Synpcc7942_0665 0.22 -0.4 662,402 - Synpcc7942_0665 0.23 -1.0 662,402 - Synpcc7942_0665 0.23 -0.2 662,429 - Synpcc7942_0665 0.26 +2.1 662,430 - Synpcc7942_0665 0.27 +0.2 662,430 - Synpcc7942_0665 0.27 +0.5 662,432 + Synpcc7942_0665 0.27 -1.0 662,445 - Synpcc7942_0665 0.29 -0.7 662,497 + Synpcc7942_0665 0.35 +1.0 662,512 - Synpcc7942_0665 0.37 -0.5 662,515 + Synpcc7942_0665 0.38 +0.7 662,515 + Synpcc7942_0665 0.38 -1.1 662,523 - Synpcc7942_0665 0.39 +0.1 662,534 + Synpcc7942_0665 0.40 -0.2 662,534 + Synpcc7942_0665 0.40 +0.6 662,542 - Synpcc7942_0665 0.41 +1.0 662,549 + Synpcc7942_0665 0.42 +2.3 662,571 + Synpcc7942_0665 0.45 +0.5 662,573 + Synpcc7942_0665 0.46 +0.1 662,573 + Synpcc7942_0665 0.46 -0.2 662,573 + Synpcc7942_0665 0.46 -1.1 662,581 - Synpcc7942_0665 0.47 -0.0 662,581 - Synpcc7942_0665 0.47 -1.2 662,600 - Synpcc7942_0665 0.49 -1.2 662,610 - Synpcc7942_0665 0.51 -1.9 662,622 + Synpcc7942_0665 0.52 -0.0 662,638 + +1.0 662,672 + +2.0 662,680 - Synpcc7942_0665 0.60 +0.8 662,703 - Synpcc7942_0665 0.63 -1.1 662,736 - Synpcc7942_0665 0.67 -0.2 662,769 + Synpcc7942_0665 0.72 +0.5 662,776 + Synpcc7942_0665 0.73 -1.8 662,776 + Synpcc7942_0665 0.73 -1.6 662,784 - Synpcc7942_0665 0.74 +0.2 662,803 + Synpcc7942_0665 0.76 +0.6 662,810 - Synpcc7942_0665 0.77 +0.5 662,821 - Synpcc7942_0665 0.79 +0.2 662,828 + Synpcc7942_0665 0.80 +0.9 662,868 + Synpcc7942_0665 0.85 +1.1 662,889 + Synpcc7942_0665 0.88 -1.4 662,894 + Synpcc7942_0665 0.89 +1.4 662,894 + Synpcc7942_0665 0.89 +0.1 662,899 - Synpcc7942_0665 0.89 +1.1 662,899 - Synpcc7942_0665 0.89 -0.4 662,902 - Synpcc7942_0665 0.90 +0.8 662,928 - +0.6 662,930 + -1.5 662,930 + +1.2 662,938 - -1.5 662,965 - -2.4 662,965 - +0.1 662,998 - -0.7 663,112 + -0.8 663,119 + +0.4 663,128 - -0.4 663,153 + -0.6 663,166 - +0.0 663,185 + +0.4 663,254 + Synpcc7942_0666 0.18 -1.6 663,280 + Synpcc7942_0666 0.22 -0.6 663,310 - Synpcc7942_0666 0.27 -0.2 663,332 + Synpcc7942_0666 0.31 +1.5 663,382 + Synpcc7942_0666 0.39 +2.0 663,389 + Synpcc7942_0666 0.40 +0.4 663,389 - Synpcc7942_0666 0.40 +0.5 663,390 - Synpcc7942_0666 0.40 -0.9 663,390 - Synpcc7942_0666 0.40 +0.6 663,419 - Synpcc7942_0666 0.45 +0.7 663,468 - Synpcc7942_0666 0.53 -2.6 663,501 - Synpcc7942_0666 0.58 +1.4 663,524 + Synpcc7942_0666 0.62 -1.8 663,533 - Synpcc7942_0666 0.63 +0.8 663,576 - Synpcc7942_0666 0.70 +1.7 663,577 + Synpcc7942_0666 0.70 -0.2 663,580 + Synpcc7942_0666 0.71 -0.4 663,598 + Synpcc7942_0666 0.74 +0.3 663,599 - Synpcc7942_0666 0.74 +0.4 663,613 + Synpcc7942_0666 0.76 -0.6 663,621 - Synpcc7942_0666 0.77 +0.4 663,685 + Synpcc7942_0666 0.88 -0.9 663,688 - +0.4 663,697 + Synpcc7942_0666 0.90 +0.2 663,700 - +1.0 663,763 - +0.3 663,802 + -0.7 663,810 - +0.1 663,810 - -0.6 663,812 - -1.2 663,817 + -0.8 663,817 + -0.3 663,827 + +0.2 663,835 - -0.9 663,857 - -0.2 663,857 - +0.9 663,860 - +0.4 663,882 - +0.8 663,882 - -1.0 663,897 + -0.4 663,897 + +0.5 663,933 + +0.5 663,941 - +0.6 663,969 + -1.0 663,977 - +0.7 664,011 + +0.1 664,038 - Synpcc7942_0667 0.17 +0.2 664,046 - Synpcc7942_0667 0.20 -0.2 664,061 + Synpcc7942_0667 0.24 -1.9 664,100 + Synpcc7942_0667 0.37 -1.0 664,172 + Synpcc7942_0667 0.60 -1.0 664,258 + Synpcc7942_0667 0.88 -0.0 664,306 + +0.2 664,384 + Synpcc7942_0668 0.55 +0.5 664,384 + Synpcc7942_0668 0.55 +0.9 664,384 + Synpcc7942_0668 0.55 +0.7 664,384 + Synpcc7942_0668 0.55 +1.4 664,392 - Synpcc7942_0668 0.61 +0.4 664,393 - Synpcc7942_0668 0.62 +1.5 664,454 + -0.6 664,454 + -0.2 664,454 + -1.2 664,462 - -1.9 664,473 + -1.3 664,478 + -0.5 664,577 + +0.4 664,600 + mpg Synpcc7942_0669 0.10 +1.6 664,618 - mpg Synpcc7942_0669 0.13 -0.4 664,636 + mpg Synpcc7942_0669 0.16 +1.9 664,660 + mpg Synpcc7942_0669 0.21 -0.4 664,695 - +1.0 664,697 + mpg Synpcc7942_0669 0.27 -1.2 664,697 + mpg Synpcc7942_0669 0.27 +0.3 664,699 + mpg Synpcc7942_0669 0.27 -0.1 664,705 - mpg Synpcc7942_0669 0.28 -0.3 664,720 + mpg Synpcc7942_0669 0.31 -0.5 664,745 + mpg Synpcc7942_0669 0.35 +0.7 664,755 + mpg Synpcc7942_0669 0.37 -1.0 664,755 + mpg Synpcc7942_0669 0.37 -2.5 664,755 + mpg Synpcc7942_0669 0.37 -0.5 664,755 + mpg Synpcc7942_0669 0.37 +0.1
Or see this region's nucleotide sequence