Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0237

Experiment: BG11 with Polymyxin B sulfate 0.000390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0235 and Synpcc7942_0236 are separated by 340 nucleotidesSynpcc7942_0236 and Synpcc7942_0237 are separated by 7 nucleotidesSynpcc7942_0237 and Synpcc7942_0238 overlap by 1 nucleotides Synpcc7942_0235: Synpcc7942_0235 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 231,162 to 231,677 _0235 Synpcc7942_0236: Synpcc7942_0236 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 232,018 to 232,557 _0236 Synpcc7942_0237: Synpcc7942_0237 - hypothetical protein, at 232,565 to 233,143 _0237 Synpcc7942_0238: Synpcc7942_0238 - hypothetical protein, at 233,143 to 234,324 _0238 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.566 kb on - strand, within Synpcc7942_0235at 231.566 kb on - strand, within Synpcc7942_0235at 231.570 kb on + strand, within Synpcc7942_0235at 231.626 kb on - strandat 231.662 kb on - strandat 231.734 kb on + strandat 231.802 kb on + strandat 231.802 kb on + strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.842 kb on - strandat 231.871 kb on + strandat 231.977 kb on + strandat 232.000 kb on + strandat 232.135 kb on + strand, within Synpcc7942_0236at 232.154 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.160 kb on + strand, within Synpcc7942_0236at 232.168 kb on - strand, within Synpcc7942_0236at 232.170 kb on + strand, within Synpcc7942_0236at 232.170 kb on + strand, within Synpcc7942_0236at 232.173 kb on - strand, within Synpcc7942_0236at 232.178 kb on - strand, within Synpcc7942_0236at 232.180 kb on - strand, within Synpcc7942_0236at 232.194 kb on - strand, within Synpcc7942_0236at 232.219 kb on + strand, within Synpcc7942_0236at 232.225 kb on - strand, within Synpcc7942_0236at 232.232 kb on - strand, within Synpcc7942_0236at 232.238 kb on - strand, within Synpcc7942_0236at 232.238 kb on - strand, within Synpcc7942_0236at 232.240 kb on - strand, within Synpcc7942_0236at 232.264 kb on + strand, within Synpcc7942_0236at 232.266 kb on + strand, within Synpcc7942_0236at 232.272 kb on - strand, within Synpcc7942_0236at 232.279 kb on + strand, within Synpcc7942_0236at 232.287 kb on - strand, within Synpcc7942_0236at 232.335 kb on + strand, within Synpcc7942_0236at 232.339 kb on + strand, within Synpcc7942_0236at 232.349 kb on + strand, within Synpcc7942_0236at 232.377 kb on - strand, within Synpcc7942_0236at 232.430 kb on + strand, within Synpcc7942_0236at 232.438 kb on - strand, within Synpcc7942_0236at 232.441 kb on + strand, within Synpcc7942_0236at 232.441 kb on + strand, within Synpcc7942_0236at 232.449 kb on - strand, within Synpcc7942_0236at 232.495 kb on - strand, within Synpcc7942_0236at 232.509 kb on + strandat 232.512 kb on - strandat 232.518 kb on + strandat 232.519 kb on + strandat 232.551 kb on + strandat 232.562 kb on + strandat 232.562 kb on + strandat 232.570 kb on - strandat 232.633 kb on + strand, within Synpcc7942_0237at 232.633 kb on + strand, within Synpcc7942_0237at 232.633 kb on + strand, within Synpcc7942_0237at 232.634 kb on + strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.641 kb on - strand, within Synpcc7942_0237at 232.677 kb on - strand, within Synpcc7942_0237at 232.729 kb on + strand, within Synpcc7942_0237at 232.729 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.743 kb on + strand, within Synpcc7942_0237at 232.744 kb on + strand, within Synpcc7942_0237at 232.752 kb on - strand, within Synpcc7942_0237at 232.769 kb on + strand, within Synpcc7942_0237at 232.777 kb on - strand, within Synpcc7942_0237at 232.794 kb on + strand, within Synpcc7942_0237at 232.804 kb on - strand, within Synpcc7942_0237at 232.807 kb on + strand, within Synpcc7942_0237at 232.813 kb on - strand, within Synpcc7942_0237at 232.815 kb on - strand, within Synpcc7942_0237at 232.831 kb on - strand, within Synpcc7942_0237at 232.838 kb on - strand, within Synpcc7942_0237at 232.838 kb on - strand, within Synpcc7942_0237at 232.852 kb on + strand, within Synpcc7942_0237at 232.916 kb on + strand, within Synpcc7942_0237at 232.920 kb on + strand, within Synpcc7942_0237at 232.928 kb on + strand, within Synpcc7942_0237at 232.928 kb on - strand, within Synpcc7942_0237at 232.957 kb on - strand, within Synpcc7942_0237at 232.965 kb on + strand, within Synpcc7942_0237at 232.976 kb on - strand, within Synpcc7942_0237at 232.988 kb on + strand, within Synpcc7942_0237at 232.989 kb on - strand, within Synpcc7942_0237at 233.006 kb on + strand, within Synpcc7942_0237at 233.014 kb on - strand, within Synpcc7942_0237at 233.014 kb on - strand, within Synpcc7942_0237at 233.019 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.024 kb on - strand, within Synpcc7942_0237at 233.058 kb on + strand, within Synpcc7942_0237at 233.073 kb on + strand, within Synpcc7942_0237at 233.074 kb on - strand, within Synpcc7942_0237at 233.094 kb on + strandat 233.116 kb on - strandat 233.149 kb on - strandat 233.151 kb on + strandat 233.159 kb on - strandat 233.168 kb on + strandat 233.188 kb on + strandat 233.188 kb on + strandat 233.241 kb on - strandat 233.246 kb on + strandat 233.260 kb on + strandat 233.261 kb on + strandat 233.284 kb on + strand, within Synpcc7942_0238at 233.284 kb on + strand, within Synpcc7942_0238at 233.285 kb on + strand, within Synpcc7942_0238at 233.292 kb on - strand, within Synpcc7942_0238at 233.292 kb on - strand, within Synpcc7942_0238at 233.343 kb on - strand, within Synpcc7942_0238at 233.383 kb on + strand, within Synpcc7942_0238at 233.496 kb on + strand, within Synpcc7942_0238at 233.501 kb on + strand, within Synpcc7942_0238at 233.504 kb on + strand, within Synpcc7942_0238at 233.506 kb on + strand, within Synpcc7942_0238at 233.506 kb on + strand, within Synpcc7942_0238at 233.522 kb on - strand, within Synpcc7942_0238at 233.538 kb on - strand, within Synpcc7942_0238at 233.569 kb on + strand, within Synpcc7942_0238at 233.598 kb on - strand, within Synpcc7942_0238at 233.599 kb on + strand, within Synpcc7942_0238at 233.617 kb on - strand, within Synpcc7942_0238at 233.649 kb on + strand, within Synpcc7942_0238at 233.662 kb on - strand, within Synpcc7942_0238at 233.698 kb on - strand, within Synpcc7942_0238at 233.712 kb on + strandat 233.778 kb on - strand, within Synpcc7942_0238at 233.787 kb on + strand, within Synpcc7942_0238at 233.790 kb on - strand, within Synpcc7942_0238at 233.795 kb on - strand, within Synpcc7942_0238at 233.795 kb on - strand, within Synpcc7942_0238at 233.810 kb on + strand, within Synpcc7942_0238at 233.840 kb on + strand, within Synpcc7942_0238at 233.840 kb on + strand, within Synpcc7942_0238at 233.840 kb on + strand, within Synpcc7942_0238at 233.848 kb on - strand, within Synpcc7942_0238at 233.848 kb on - strand, within Synpcc7942_0238at 233.855 kb on + strand, within Synpcc7942_0238at 233.863 kb on - strand, within Synpcc7942_0238at 233.873 kb on - strand, within Synpcc7942_0238at 233.880 kb on - strand, within Synpcc7942_0238at 233.882 kb on + strand, within Synpcc7942_0238at 233.884 kb on + strand, within Synpcc7942_0238at 233.900 kb on - strand, within Synpcc7942_0238at 233.901 kb on - strand, within Synpcc7942_0238at 233.969 kb on - strand, within Synpcc7942_0238at 234.011 kb on + strand, within Synpcc7942_0238at 234.019 kb on - strand, within Synpcc7942_0238at 234.036 kb on - strand, within Synpcc7942_0238at 234.036 kb on - strand, within Synpcc7942_0238at 234.036 kb on - strand, within Synpcc7942_0238at 234.041 kb on - strand, within Synpcc7942_0238at 234.041 kb on - strand, within Synpcc7942_0238at 234.051 kb on - strand, within Synpcc7942_0238at 234.051 kb on - strand, within Synpcc7942_0238at 234.074 kb on - strand, within Synpcc7942_0238at 234.075 kb on - strand, within Synpcc7942_0238at 234.075 kb on - strand, within Synpcc7942_0238at 234.075 kb on - strand, within Synpcc7942_0238at 234.075 kb on - strand, within Synpcc7942_0238at 234.080 kb on + strand, within Synpcc7942_0238at 234.129 kb on + strand, within Synpcc7942_0238at 234.137 kb on - strand, within Synpcc7942_0238at 234.139 kb on + strand, within Synpcc7942_0238at 234.139 kb on + strand, within Synpcc7942_0238at 234.139 kb on + strand, within Synpcc7942_0238

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.000390625 mg/ml
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231,566 - Synpcc7942_0235 0.78 +1.0
231,566 - Synpcc7942_0235 0.78 -0.2
231,570 + Synpcc7942_0235 0.79 -2.3
231,626 - -2.4
231,662 - +0.3
231,734 + +0.6
231,802 + +0.0
231,802 + +0.2
231,810 - -0.1
231,810 - +0.7
231,810 - -0.5
231,810 - -0.7
231,842 - -0.0
231,871 + +1.5
231,977 + -3.3
232,000 + -1.2
232,135 + Synpcc7942_0236 0.22 -1.0
232,154 + Synpcc7942_0236 0.25 -3.5
232,160 + Synpcc7942_0236 0.26 -1.7
232,160 + Synpcc7942_0236 0.26 -0.6
232,160 + Synpcc7942_0236 0.26 -0.2
232,160 + Synpcc7942_0236 0.26 -1.6
232,168 - Synpcc7942_0236 0.28 -0.2
232,170 + Synpcc7942_0236 0.28 +0.0
232,170 + Synpcc7942_0236 0.28 -0.5
232,173 - Synpcc7942_0236 0.29 +1.4
232,178 - Synpcc7942_0236 0.30 +0.1
232,180 - Synpcc7942_0236 0.30 -0.5
232,194 - Synpcc7942_0236 0.33 -0.0
232,219 + Synpcc7942_0236 0.37 -1.2
232,225 - Synpcc7942_0236 0.38 +0.3
232,232 - Synpcc7942_0236 0.40 +1.4
232,238 - Synpcc7942_0236 0.41 -0.7
232,238 - Synpcc7942_0236 0.41 +0.1
232,240 - Synpcc7942_0236 0.41 +0.1
232,264 + Synpcc7942_0236 0.46 -1.5
232,266 + Synpcc7942_0236 0.46 +0.5
232,272 - Synpcc7942_0236 0.47 -2.4
232,279 + Synpcc7942_0236 0.48 -0.5
232,287 - Synpcc7942_0236 0.50 +1.4
232,335 + Synpcc7942_0236 0.59 +0.1
232,339 + Synpcc7942_0236 0.59 -0.3
232,349 + Synpcc7942_0236 0.61 -0.4
232,377 - Synpcc7942_0236 0.66 -1.5
232,430 + Synpcc7942_0236 0.76 -0.0
232,438 - Synpcc7942_0236 0.78 -2.6
232,441 + Synpcc7942_0236 0.78 -1.0
232,441 + Synpcc7942_0236 0.78 +0.7
232,449 - Synpcc7942_0236 0.80 +1.0
232,495 - Synpcc7942_0236 0.88 +0.4
232,509 + -1.4
232,512 - -1.9
232,518 + -1.7
232,519 + -0.3
232,551 + -0.5
232,562 + -0.5
232,562 + -1.0
232,570 - -0.7
232,633 + Synpcc7942_0237 0.12 -0.6
232,633 + Synpcc7942_0237 0.12 -0.6
232,633 + Synpcc7942_0237 0.12 -0.2
232,634 + Synpcc7942_0237 0.12 -1.4
232,641 - Synpcc7942_0237 0.13 -1.3
232,641 - Synpcc7942_0237 0.13 -0.3
232,641 - Synpcc7942_0237 0.13 -1.1
232,641 - Synpcc7942_0237 0.13 -0.4
232,677 - Synpcc7942_0237 0.19 -2.4
232,729 + Synpcc7942_0237 0.28 -2.6
232,729 + Synpcc7942_0237 0.28 +0.1
232,743 + Synpcc7942_0237 0.31 +0.3
232,743 + Synpcc7942_0237 0.31 -2.7
232,743 + Synpcc7942_0237 0.31 +2.3
232,744 + Synpcc7942_0237 0.31 -0.5
232,752 - Synpcc7942_0237 0.32 -2.2
232,769 + Synpcc7942_0237 0.35 -1.6
232,777 - Synpcc7942_0237 0.37 -0.8
232,794 + Synpcc7942_0237 0.40 -0.0
232,804 - Synpcc7942_0237 0.41 -2.7
232,807 + Synpcc7942_0237 0.42 -1.4
232,813 - Synpcc7942_0237 0.43 -1.6
232,815 - Synpcc7942_0237 0.43 -2.8
232,831 - Synpcc7942_0237 0.46 -1.7
232,838 - Synpcc7942_0237 0.47 +1.0
232,838 - Synpcc7942_0237 0.47 -0.6
232,852 + Synpcc7942_0237 0.50 +1.1
232,916 + Synpcc7942_0237 0.61 +0.1
232,920 + Synpcc7942_0237 0.61 +2.0
232,928 + Synpcc7942_0237 0.63 -0.6
232,928 - Synpcc7942_0237 0.63 -0.4
232,957 - Synpcc7942_0237 0.68 +1.0
232,965 + Synpcc7942_0237 0.69 +0.4
232,976 - Synpcc7942_0237 0.71 -0.8
232,988 + Synpcc7942_0237 0.73 +0.2
232,989 - Synpcc7942_0237 0.73 -0.2
233,006 + Synpcc7942_0237 0.76 +0.1
233,014 - Synpcc7942_0237 0.78 -1.9
233,014 - Synpcc7942_0237 0.78 -1.2
233,019 - Synpcc7942_0237 0.78 -1.2
233,024 - Synpcc7942_0237 0.79 +0.2
233,024 - Synpcc7942_0237 0.79 +2.0
233,024 - Synpcc7942_0237 0.79 -0.5
233,058 + Synpcc7942_0237 0.85 -2.1
233,073 + Synpcc7942_0237 0.88 +2.3
233,074 - Synpcc7942_0237 0.88 -0.8
233,094 + -1.6
233,116 - -1.1
233,149 - -3.3
233,151 + -1.2
233,159 - +2.3
233,168 + -1.6
233,188 + -0.7
233,188 + -0.5
233,241 - -0.7
233,246 + -0.3
233,260 + +0.8
233,261 + +1.5
233,284 + Synpcc7942_0238 0.12 -0.0
233,284 + Synpcc7942_0238 0.12 -0.4
233,285 + Synpcc7942_0238 0.12 -0.4
233,292 - Synpcc7942_0238 0.13 +2.0
233,292 - Synpcc7942_0238 0.13 +1.0
233,343 - Synpcc7942_0238 0.17 -0.0
233,383 + Synpcc7942_0238 0.20 -1.8
233,496 + Synpcc7942_0238 0.30 -0.4
233,501 + Synpcc7942_0238 0.30 +0.4
233,504 + Synpcc7942_0238 0.31 -0.6
233,506 + Synpcc7942_0238 0.31 +0.0
233,506 + Synpcc7942_0238 0.31 -1.8
233,522 - Synpcc7942_0238 0.32 -2.1
233,538 - Synpcc7942_0238 0.33 -0.5
233,569 + Synpcc7942_0238 0.36 -0.8
233,598 - Synpcc7942_0238 0.38 -1.0
233,599 + Synpcc7942_0238 0.39 +0.1
233,617 - Synpcc7942_0238 0.40 +0.3
233,649 + Synpcc7942_0238 0.43 +1.0
233,662 - Synpcc7942_0238 0.44 -0.8
233,698 - Synpcc7942_0238 0.47 -0.6
233,712 + -0.0
233,778 - Synpcc7942_0238 0.54 -2.8
233,787 + Synpcc7942_0238 0.54 +0.5
233,790 - Synpcc7942_0238 0.55 +2.2
233,795 - Synpcc7942_0238 0.55 -0.6
233,795 - Synpcc7942_0238 0.55 +0.1
233,810 + Synpcc7942_0238 0.56 -0.0
233,840 + Synpcc7942_0238 0.59 -1.6
233,840 + Synpcc7942_0238 0.59 +1.7
233,840 + Synpcc7942_0238 0.59 +0.6
233,848 - Synpcc7942_0238 0.60 -0.3
233,848 - Synpcc7942_0238 0.60 -0.9
233,855 + Synpcc7942_0238 0.60 +1.0
233,863 - Synpcc7942_0238 0.61 +0.6
233,873 - Synpcc7942_0238 0.62 -0.6
233,880 - Synpcc7942_0238 0.62 -1.7
233,882 + Synpcc7942_0238 0.63 -1.7
233,884 + Synpcc7942_0238 0.63 +0.2
233,900 - Synpcc7942_0238 0.64 -0.7
233,901 - Synpcc7942_0238 0.64 -0.0
233,969 - Synpcc7942_0238 0.70 +1.1
234,011 + Synpcc7942_0238 0.73 -1.5
234,019 - Synpcc7942_0238 0.74 -0.3
234,036 - Synpcc7942_0238 0.76 -1.7
234,036 - Synpcc7942_0238 0.76 -1.2
234,036 - Synpcc7942_0238 0.76 -0.6
234,041 - Synpcc7942_0238 0.76 +0.5
234,041 - Synpcc7942_0238 0.76 -0.3
234,051 - Synpcc7942_0238 0.77 -0.3
234,051 - Synpcc7942_0238 0.77 -1.4
234,074 - Synpcc7942_0238 0.79 -0.2
234,075 - Synpcc7942_0238 0.79 -0.2
234,075 - Synpcc7942_0238 0.79 -0.9
234,075 - Synpcc7942_0238 0.79 -0.3
234,075 - Synpcc7942_0238 0.79 +0.8
234,080 + Synpcc7942_0238 0.79 +0.5
234,129 + Synpcc7942_0238 0.83 +0.6
234,137 - Synpcc7942_0238 0.84 -0.2
234,139 + Synpcc7942_0238 0.84 -0.2
234,139 + Synpcc7942_0238 0.84 -0.8
234,139 + Synpcc7942_0238 0.84 -0.1

Or see this region's nucleotide sequence