Experiment: BG11 with Polymyxin B sulfate 0.000390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0047 and Synpcc7942_0048 are separated by 45 nucleotides Synpcc7942_0048 and pilA are separated by 188 nucleotides pilA and Synpcc7942_0050 are separated by 85 nucleotides
Synpcc7942_0047: Synpcc7942_0047 - TPR repeat, at 46,515 to 48,881
_0047
Synpcc7942_0048: Synpcc7942_0048 - pilin polypeptide PilA-like, at 48,927 to 49,361
_0048
Synpcc7942_0049: pilA - pilin polypeptide PilA-like, at 49,550 to 49,984
pilA
Synpcc7942_0050: Synpcc7942_0050 - hypothetical protein, at 50,070 to 52,616
_0050
Position (kb) 49
50 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 48.556 kb on + strand, within Synpcc7942_0047 at 48.579 kb on + strand, within Synpcc7942_0047 at 48.586 kb on + strand, within Synpcc7942_0047 at 48.626 kb on + strand, within Synpcc7942_0047 at 48.632 kb on - strand, within Synpcc7942_0047 at 48.634 kb on - strand, within Synpcc7942_0047 at 48.643 kb on + strand, within Synpcc7942_0047 at 48.693 kb on - strand at 48.706 kb on - strand at 48.710 kb on - strand at 48.722 kb on + strand at 48.845 kb on + strand at 49.092 kb on - strand, within Synpcc7942_0048 at 49.382 kb on - strand at 49.650 kb on + strand, within pilA at 49.680 kb on + strand, within pilA at 49.688 kb on - strand, within pilA at 49.698 kb on - strand, within pilA at 49.809 kb on + strand, within pilA at 49.822 kb on - strand, within pilA at 49.995 kb on - strand at 50.013 kb on - strand at 50.022 kb on + strand at 50.107 kb on - strand at 50.124 kb on + strand at 50.191 kb on + strand at 50.207 kb on + strand at 50.207 kb on + strand at 50.207 kb on + strand at 50.212 kb on + strand at 50.215 kb on - strand at 50.215 kb on - strand at 50.220 kb on - strand at 50.231 kb on + strand at 50.239 kb on - strand at 50.301 kb on + strand at 50.301 kb on + strand at 50.309 kb on - strand at 50.372 kb on + strand, within Synpcc7942_0050 at 50.372 kb on + strand, within Synpcc7942_0050 at 50.372 kb on + strand, within Synpcc7942_0050 at 50.562 kb on - strand, within Synpcc7942_0050 at 50.577 kb on - strand, within Synpcc7942_0050 at 50.702 kb on - strand, within Synpcc7942_0050 at 50.871 kb on - strand, within Synpcc7942_0050 at 50.915 kb on - strand, within Synpcc7942_0050 at 50.915 kb on - strand, within Synpcc7942_0050 at 50.930 kb on + strand, within Synpcc7942_0050 at 50.931 kb on - strand, within Synpcc7942_0050 at 50.948 kb on + strand, within Synpcc7942_0050 at 50.956 kb on - strand, within Synpcc7942_0050 at 50.981 kb on + strand, within Synpcc7942_0050
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Polymyxin B sulfate 0.000390625 mg/ml remove 48,556 + Synpcc7942_0047 0.86 -0.3 48,579 + Synpcc7942_0047 0.87 -1.2 48,586 + Synpcc7942_0047 0.87 -0.2 48,626 + Synpcc7942_0047 0.89 +1.4 48,632 - Synpcc7942_0047 0.89 +0.5 48,634 - Synpcc7942_0047 0.90 -0.3 48,643 + Synpcc7942_0047 0.90 -0.5 48,693 - +0.0 48,706 - +0.5 48,710 - +0.6 48,722 + +0.8 48,845 + +0.4 49,092 - Synpcc7942_0048 0.38 -0.4 49,382 - -0.1 49,650 + pilA Synpcc7942_0049 0.23 +3.0 49,680 + pilA Synpcc7942_0049 0.30 +2.8 49,688 - pilA Synpcc7942_0049 0.32 +0.4 49,698 - pilA Synpcc7942_0049 0.34 +1.1 49,809 + pilA Synpcc7942_0049 0.60 +1.4 49,822 - pilA Synpcc7942_0049 0.63 -0.9 49,995 - +2.8 50,013 - +3.0 50,022 + -0.1 50,107 - +0.9 50,124 + +0.4 50,191 + -0.1 50,207 + -1.8 50,207 + -1.1 50,207 + -0.9 50,212 + +1.7 50,215 - +1.4 50,215 - -0.5 50,220 - -1.5 50,231 + +0.8 50,239 - -1.5 50,301 + +0.2 50,301 + -1.1 50,309 - -1.9 50,372 + Synpcc7942_0050 0.12 +0.1 50,372 + Synpcc7942_0050 0.12 -1.1 50,372 + Synpcc7942_0050 0.12 +1.2 50,562 - Synpcc7942_0050 0.19 -1.2 50,577 - Synpcc7942_0050 0.20 -2.1 50,702 - Synpcc7942_0050 0.25 +0.1 50,871 - Synpcc7942_0050 0.31 -0.1 50,915 - Synpcc7942_0050 0.33 -0.4 50,915 - Synpcc7942_0050 0.33 -2.4 50,930 + Synpcc7942_0050 0.34 +0.9 50,931 - Synpcc7942_0050 0.34 -1.8 50,948 + Synpcc7942_0050 0.34 +0.6 50,956 - Synpcc7942_0050 0.35 +0.9 50,981 + Synpcc7942_0050 0.36 -0.5
Or see this region's nucleotide sequence