Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37325

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,847,181	+		RR42_RS37315	0.79	-1.0
3,847,181	+		RR42_RS37315	0.79	-3.3
3,847,330	-		RR42_RS37315	0.87	+0.4
3,847,343	-		RR42_RS37315	0.88	-0.8
3,847,460	+				+0.6
3,847,460	+				+0.3
3,847,460	+				+0.6
3,847,460	+				-1.0
3,847,460	+				+0.2
3,847,460	+				+0.0
3,847,460	+				-0.0
3,847,461	-				-1.5
3,847,518	-				-0.5
3,847,585	+				+0.7
3,847,585	+				+1.2
3,847,585	+				-0.1
3,847,586	-				+1.7
3,847,603	+				+0.1
3,847,603	+				+0.7
3,847,603	+				+0.3
3,847,603	+				-2.0
3,847,603	+				+1.2
3,847,604	-				-0.5
3,847,604	-				+0.8
3,847,604	-				-3.0
3,847,604	-				+3.0
3,847,649	-		RR42_RS37320	0.14	+0.8
3,847,729	-		RR42_RS37320	0.38	-1.3
3,848,082	-				-0.5
3,848,082	-				+0.2
3,848,082	-				-1.0
3,848,091	-				-0.5
3,848,102	+				-0.4
3,848,103	-				+0.5
3,848,103	-				-0.1
3,848,174	+				-0.6
3,848,174	+				+0.0
3,848,175	-				-1.0
3,848,229	-				-0.1
3,848,235	+				+2.0
3,848,235	+				-0.0
3,848,235	+				-1.5
3,848,276	+				-1.3
3,848,330	+				+0.5
3,848,384	+				-1.7
3,848,384	+				-0.2
3,848,384	+				-1.0
3,848,384	+				-0.9
3,848,385	-				-0.0
3,848,385	-				+0.1
3,848,385	-				+0.4
3,848,385	-				-0.3
3,848,402	+				+0.8
3,848,403	-				+2.0
3,848,403	-				-0.3
3,848,426	+				+0.7
3,848,427	-				+1.0
3,848,510	+		RR42_RS37325	0.12	-1.0
3,848,510	+		RR42_RS37325	0.12	+0.4
3,848,510	+		RR42_RS37325	0.12	+0.1
3,848,511	-		RR42_RS37325	0.12	-1.4
3,848,573	+				-1.0
3,848,582	+		RR42_RS37325	0.13	-0.2
3,848,588	+		RR42_RS37325	0.13	-0.3
3,848,588	+		RR42_RS37325	0.13	+1.1
3,848,588	+		RR42_RS37325	0.13	+1.0
3,848,589	-		RR42_RS37325	0.13	+0.3
3,848,589	-		RR42_RS37325	0.13	+1.3
3,848,690	+		RR42_RS37325	0.16	-1.0
3,848,691	-				-0.5
3,848,691	-		RR42_RS37325	0.16	+2.1
3,848,849	+		RR42_RS37325	0.19	+0.6
3,848,849	+		RR42_RS37325	0.19	+0.2
3,848,850	-		RR42_RS37325	0.19	-0.7
3,848,850	-		RR42_RS37325	0.19	+1.6
3,848,905	+		RR42_RS37325	0.21	+0.1
3,848,906	-		RR42_RS37325	0.21	-0.1
3,849,130	+		RR42_RS37325	0.26	+0.3
3,849,332	+		RR42_RS37325	0.30	-0.1
3,849,332	+		RR42_RS37325	0.30	-1.5
3,849,431	+		RR42_RS37325	0.32	+2.2
3,849,432	-		RR42_RS37325	0.32	+0.7
3,849,542	+		RR42_RS37325	0.35	+0.8
3,849,542	+		RR42_RS37325	0.35	+0.4
3,849,542	+		RR42_RS37325	0.35	+0.1
3,849,542	+		RR42_RS37325	0.35	+0.4
3,849,542	+		RR42_RS37325	0.35	+0.3
3,849,542	+		RR42_RS37325	0.35	-0.6
3,849,542	+		RR42_RS37325	0.35	+0.2
3,849,542	+		RR42_RS37325	0.35	+0.5
3,849,542	+		RR42_RS37325	0.35	-0.5
3,849,543	-		RR42_RS37325	0.35	-0.6
3,849,543	-		RR42_RS37325	0.35	+0.1
3,849,543	-		RR42_RS37325	0.35	-0.2
3,849,543	-		RR42_RS37325	0.35	+0.5
3,849,545	+		RR42_RS37325	0.35	+0.6
3,849,545	+		RR42_RS37325	0.35	+0.7
3,849,545	+		RR42_RS37325	0.35	-1.5
3,849,546	-		RR42_RS37325	0.35	+0.4
3,849,611	+		RR42_RS37325	0.37	-1.8
3,849,611	+		RR42_RS37325	0.37	-0.4
3,849,611	+		RR42_RS37325	0.37	+0.0
3,849,611	+		RR42_RS37325	0.37	+1.5
3,849,612	-		RR42_RS37325	0.37	+2.4
3,849,612	-		RR42_RS37325	0.37	+0.1
3,849,612	-		RR42_RS37325	0.37	-1.0
3,849,612	-		RR42_RS37325	0.37	+1.2
3,849,612	-		RR42_RS37325	0.37	+0.2
3,849,612	-		RR42_RS37325	0.37	-2.2
3,849,612	-		RR42_RS37325	0.37	-0.3
3,849,713	+		RR42_RS37325	0.39	-0.5
3,849,714	-		RR42_RS37325	0.39	-0.4
3,849,714	-		RR42_RS37325	0.39	-0.4
3,849,835	+		RR42_RS37325	0.42	+0.0
3,849,836	-		RR42_RS37325	0.42	+0.7
3,849,875	+		RR42_RS37325	0.43	-0.6
3,849,875	+		RR42_RS37325	0.43	-0.4
3,849,912	-		RR42_RS37325	0.43	+1.0
3,849,995	+		RR42_RS37325	0.45	+1.4
3,849,996	-		RR42_RS37325	0.45	+0.0
3,849,996	-		RR42_RS37325	0.45	+1.7
3,849,996	-		RR42_RS37325	0.45	-0.3
3,849,996	-		RR42_RS37325	0.45	-0.1
3,849,996	-		RR42_RS37325	0.45	+1.3
3,849,996	-		RR42_RS37325	0.45	-1.1
3,850,077	-		RR42_RS37325	0.47	+1.4
3,850,116	-		RR42_RS37325	0.48	+1.0
3,850,241	+		RR42_RS37325	0.51	+0.5
3,850,241	+		RR42_RS37325	0.51	+0.8
3,850,241	+		RR42_RS37325	0.51	+0.5
3,850,241	+		RR42_RS37325	0.51	-0.5
3,850,242	-		RR42_RS37325	0.51	-0.8
3,850,242	-		RR42_RS37325	0.51	-0.4
3,850,263	-		RR42_RS37325	0.51	+1.4
3,850,281	+		RR42_RS37325	0.52	-0.7
3,850,362	-		RR42_RS37325	0.54	-0.7
3,850,362	-		RR42_RS37325	0.54	+0.4
3,850,362	-		RR42_RS37325	0.54	-1.4
3,850,362	-		RR42_RS37325	0.54	-0.8
3,850,454	+		RR42_RS37325	0.56	-2.7
3,850,455	-		RR42_RS37325	0.56	+0.0
3,850,519	+		RR42_RS37325	0.57	-0.1
3,850,519	+		RR42_RS37325	0.57	-0.7
3,850,519	+		RR42_RS37325	0.57	+0.8
3,850,706	+		RR42_RS37325	0.61	+0.6
3,850,707	-		RR42_RS37325	0.61	+0.9
3,850,707	-		RR42_RS37325	0.61	-2.1
3,850,707	-		RR42_RS37325	0.61	-0.3
3,850,707	-		RR42_RS37325	0.61	-1.5
3,850,707	-		RR42_RS37325	0.61	+1.0
3,850,722	+		RR42_RS37325	0.62	+0.5
3,850,723	-		RR42_RS37325	0.62	-0.5
3,851,027	-		RR42_RS37325	0.69	-0.1
3,851,103	-		RR42_RS37325	0.70	+1.8
3,851,252	+		RR42_RS37325	0.74	+0.1
3,851,252	+		RR42_RS37325	0.74	+0.8
3,851,252	+		RR42_RS37325	0.74	-0.4
3,851,252	+		RR42_RS37325	0.74	+1.6
3,851,252	+		RR42_RS37325	0.74	+1.7
3,851,253	-		RR42_RS37325	0.74	+1.7
3,851,253	-		RR42_RS37325	0.74	-0.0
3,851,253	-		RR42_RS37325	0.74	+1.1
3,851,253	-		RR42_RS37325	0.74	+0.3
3,851,253	-		RR42_RS37325	0.74	-0.8
3,851,606	+		RR42_RS37325	0.82	+2.2
3,851,607	-		RR42_RS37325	0.82	+0.0
3,851,680	+		RR42_RS37325	0.84	+1.9
3,851,680	+		RR42_RS37325	0.84	+0.8
3,851,680	+		RR42_RS37325	0.84	+0.7
3,851,680	+		RR42_RS37325	0.84	-0.2
3,851,680	+		RR42_RS37325	0.84	-1.1
3,851,681	-				-0.5
3,851,681	-		RR42_RS37325	0.84	+1.2
3,851,681	-		RR42_RS37325	0.84	-0.2
3,851,681	-		RR42_RS37325	0.84	-0.0
3,851,695	-		RR42_RS37325	0.84	-0.1
3,851,695	-		RR42_RS37325	0.84	+1.0
3,851,744	+		RR42_RS37325	0.85	-1.3
3,851,744	+		RR42_RS37325	0.85	-0.8
3,851,865	-		RR42_RS37325	0.88	+0.2
3,851,865	-		RR42_RS37325	0.88	+0.5
3,851,867	+		RR42_RS37325	0.88	-1.3
3,851,867	+		RR42_RS37325	0.88	+0.3
3,851,868	-		RR42_RS37325	0.88	+0.4
3,851,868	-		RR42_RS37325	0.88	+0.4
3,851,918	+		RR42_RS37325	0.89	-0.2
3,852,065	+				-1.8
3,852,065	+				-0.2
3,852,066	-				-3.0
3,852,066	-				-3.5
3,852,119	+				+0.2
3,852,120	-				+0.9
3,852,207	-				-1.4
3,852,207	-				+1.2
3,852,207	-				+1.4
3,852,207	-				-2.7
3,852,334	+				-1.3
3,852,334	+				+2.4
3,852,335	-				+0.8
3,852,336	+				+0.7
3,852,336	+				+1.3
3,852,336	+				+1.1
3,852,336	+				-0.5
3,852,336	+				+0.3
3,852,336	+				-0.4
3,852,336	+				+1.3
3,852,336	+				-0.8
3,852,336	+				-1.8
3,852,336	+				+0.3
3,852,336	+				-2.8
3,852,337	-				+0.5
3,852,489	+				-2.2
3,852,489	+				-1.3
3,852,490	-				-2.0
3,852,499	+				-2.4
3,852,499	+				-1.2
3,852,500	-				+0.3
3,852,502	+		RR42_RS37330	0.10	-2.0
3,852,503	-		RR42_RS37330	0.10	-0.8
3,852,503	-		RR42_RS37330	0.10	-0.2
3,852,772	+		RR42_RS37330	0.32	-1.8
3,852,772	+		RR42_RS37330	0.32	-2.9
3,852,773	-		RR42_RS37330	0.32	+1.0
3,852,782	+		RR42_RS37330	0.33	-3.2
3,852,790	+		RR42_RS37330	0.34	-3.0
3,852,790	+		RR42_RS37330	0.34	-2.0
3,852,791	-		RR42_RS37330	0.34	+0.0
3,852,791	-		RR42_RS37330	0.34	-1.4
3,852,985	+		RR42_RS37330	0.49	-1.8
3,852,985	+		RR42_RS37330	0.49	-3.1
3,852,986	-		RR42_RS37330	0.50	-1.7
3,852,986	-		RR42_RS37330	0.50	-2.7
3,852,986	-		RR42_RS37330	0.50	-1.5
3,853,331	+		RR42_RS37330	0.78	+1.0
3,853,369	+		RR42_RS37330	0.81	-0.5
3,853,369	+		RR42_RS37330	0.81	-1.9