Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36335 and RR42_RS36340 are separated by 17 nucleotides RR42_RS36340 and RR42_RS36345 are separated by 208 nucleotides RR42_RS36345 and RR42_RS36350 overlap by 4 nucleotides
RR42_RS36335: RR42_RS36335 - enoyl-CoA hydratase, at 3,604,247 to 3,605,134
_RS36335
RR42_RS36340: RR42_RS36340 - NADH dehydrogenase, at 3,605,152 to 3,605,823
_RS36340
RR42_RS36345: RR42_RS36345 - hydroxyproline-2-epimerase, at 3,606,032 to 3,607,000
_RS36345
RR42_RS36350: RR42_RS36350 - D-amino acid oxidase, at 3,606,997 to 3,608,097
_RS36350
Position (kb) 3606
3607
3608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3605.129 kb on - strand at 3605.380 kb on + strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.381 kb on - strand, within RR42_RS36340 at 3605.389 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.596 kb on + strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.597 kb on - strand, within RR42_RS36340 at 3605.860 kb on + strand at 3605.860 kb on + strand at 3605.928 kb on - strand at 3606.272 kb on + strand, within RR42_RS36345 at 3606.362 kb on - strand, within RR42_RS36345 at 3606.362 kb on - strand, within RR42_RS36345 at 3606.647 kb on - strand, within RR42_RS36345 at 3606.722 kb on + strand, within RR42_RS36345 at 3606.723 kb on - strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.848 kb on + strand, within RR42_RS36345 at 3606.849 kb on - strand, within RR42_RS36345 at 3606.849 kb on - strand, within RR42_RS36345 at 3606.908 kb on + strand at 3606.909 kb on - strand at 3606.909 kb on - strand at 3607.861 kb on + strand, within RR42_RS36350 at 3607.862 kb on - strand, within RR42_RS36350 at 3607.862 kb on - strand, within RR42_RS36350
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 3,605,129 - -0.9 3,605,380 + RR42_RS36340 0.34 -1.0 3,605,381 - RR42_RS36340 0.34 +0.0 3,605,381 - RR42_RS36340 0.34 -1.1 3,605,389 + RR42_RS36340 0.35 -3.1 3,605,596 + RR42_RS36340 0.66 -0.3 3,605,596 + RR42_RS36340 0.66 +0.1 3,605,596 + RR42_RS36340 0.66 +0.1 3,605,596 + RR42_RS36340 0.66 +0.7 3,605,597 - RR42_RS36340 0.66 -3.2 3,605,597 - RR42_RS36340 0.66 +1.1 3,605,860 + -2.1 3,605,860 + -1.0 3,605,928 - -2.0 3,606,272 + RR42_RS36345 0.25 -1.8 3,606,362 - RR42_RS36345 0.34 -2.3 3,606,362 - RR42_RS36345 0.34 +0.3 3,606,647 - RR42_RS36345 0.63 +0.5 3,606,722 + RR42_RS36345 0.71 -3.1 3,606,723 - RR42_RS36345 0.71 -3.4 3,606,848 + RR42_RS36345 0.84 -0.7 3,606,848 + RR42_RS36345 0.84 -1.0 3,606,848 + RR42_RS36345 0.84 -0.3 3,606,849 - RR42_RS36345 0.84 -0.4 3,606,849 - RR42_RS36345 0.84 +0.5 3,606,908 + +0.0 3,606,909 - +1.3 3,606,909 - +1.3 3,607,861 + RR42_RS36350 0.78 +0.3 3,607,862 - RR42_RS36350 0.79 +1.8 3,607,862 - RR42_RS36350 0.79 +0.4
Or see this region's nucleotide sequence