Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36225 and RR42_RS36230 are separated by 217 nucleotides RR42_RS36230 and RR42_RS36235 are separated by 44 nucleotides RR42_RS36235 and RR42_RS36240 overlap by 4 nucleotides
RR42_RS36225: RR42_RS36225 - (2Fe-2S)-binding protein, at 3,576,726 to 3,577,763
_RS36225
RR42_RS36230: RR42_RS36230 - nitrate ABC transporter ATPase, at 3,577,981 to 3,578,724
_RS36230
RR42_RS36235: RR42_RS36235 - ABC transporter ATP-binding protein, at 3,578,769 to 3,579,563
_RS36235
RR42_RS36240: RR42_RS36240 - amidohydrolase, at 3,579,560 to 3,581,029
_RS36240
Position (kb)
3577
3578
3579 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3577.041 kb on + strand, within RR42_RS36225 at 3577.041 kb on + strand, within RR42_RS36225 at 3577.042 kb on - strand, within RR42_RS36225 at 3577.059 kb on + strand, within RR42_RS36225 at 3577.059 kb on + strand, within RR42_RS36225 at 3577.060 kb on - strand, within RR42_RS36225 at 3577.060 kb on - strand, within RR42_RS36225 at 3577.060 kb on - strand, within RR42_RS36225 at 3577.065 kb on + strand, within RR42_RS36225 at 3577.272 kb on + strand, within RR42_RS36225 at 3577.273 kb on - strand, within RR42_RS36225 at 3577.273 kb on - strand, within RR42_RS36225 at 3577.385 kb on + strand, within RR42_RS36225 at 3577.386 kb on - strand, within RR42_RS36225 at 3577.434 kb on + strand, within RR42_RS36225 at 3577.435 kb on - strand, within RR42_RS36225 at 3577.464 kb on + strand, within RR42_RS36225 at 3577.618 kb on - strand, within RR42_RS36225 at 3577.618 kb on - strand, within RR42_RS36225 at 3577.830 kb on + strand at 3577.830 kb on + strand at 3578.104 kb on - strand, within RR42_RS36230 at 3578.104 kb on - strand, within RR42_RS36230 at 3578.104 kb on - strand, within RR42_RS36230 at 3578.527 kb on + strand, within RR42_RS36230 at 3578.527 kb on + strand, within RR42_RS36230 at 3578.527 kb on + strand, within RR42_RS36230 at 3578.528 kb on - strand, within RR42_RS36230 at 3578.528 kb on - strand, within RR42_RS36230 at 3578.528 kb on - strand, within RR42_RS36230 at 3578.528 kb on - strand, within RR42_RS36230 at 3578.540 kb on - strand, within RR42_RS36230 at 3578.659 kb on + strand at 3578.722 kb on + strand at 3578.722 kb on + strand at 3578.782 kb on + strand at 3578.782 kb on + strand at 3578.887 kb on - strand, within RR42_RS36235 at 3578.956 kb on + strand, within RR42_RS36235 at 3579.069 kb on + strand, within RR42_RS36235 at 3579.272 kb on + strand, within RR42_RS36235 at 3579.310 kb on - strand, within RR42_RS36235 at 3579.310 kb on - strand, within RR42_RS36235 at 3579.310 kb on - strand, within RR42_RS36235 at 3579.412 kb on - strand, within RR42_RS36235 at 3579.412 kb on - strand, within RR42_RS36235
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 3,577,041 + RR42_RS36225 0.30 -1.0 3,577,041 + RR42_RS36225 0.30 -1.3 3,577,042 - RR42_RS36225 0.30 +1.1 3,577,059 + RR42_RS36225 0.32 +1.9 3,577,059 + RR42_RS36225 0.32 -1.1 3,577,060 - RR42_RS36225 0.32 -2.0 3,577,060 - RR42_RS36225 0.32 +0.2 3,577,060 - RR42_RS36225 0.32 +0.5 3,577,065 + RR42_RS36225 0.33 +0.0 3,577,272 + RR42_RS36225 0.53 -1.2 3,577,273 - RR42_RS36225 0.53 -0.5 3,577,273 - RR42_RS36225 0.53 -2.0 3,577,385 + RR42_RS36225 0.63 +0.5 3,577,386 - RR42_RS36225 0.64 -0.5 3,577,434 + RR42_RS36225 0.68 -0.8 3,577,435 - RR42_RS36225 0.68 +0.6 3,577,464 + RR42_RS36225 0.71 -0.8 3,577,618 - RR42_RS36225 0.86 -0.5 3,577,618 - RR42_RS36225 0.86 -1.8 3,577,830 + +0.4 3,577,830 + +1.3 3,578,104 - RR42_RS36230 0.17 +0.2 3,578,104 - RR42_RS36230 0.17 +0.7 3,578,104 - RR42_RS36230 0.17 +0.4 3,578,527 + RR42_RS36230 0.73 +1.2 3,578,527 + RR42_RS36230 0.73 +0.0 3,578,527 + RR42_RS36230 0.73 -0.6 3,578,528 - RR42_RS36230 0.74 -0.3 3,578,528 - RR42_RS36230 0.74 -0.6 3,578,528 - RR42_RS36230 0.74 +0.3 3,578,528 - RR42_RS36230 0.74 -1.5 3,578,540 - RR42_RS36230 0.75 -1.7 3,578,659 + +0.7 3,578,722 + -2.1 3,578,722 + +0.6 3,578,782 + +0.4 3,578,782 + -2.1 3,578,887 - RR42_RS36235 0.15 -1.0 3,578,956 + RR42_RS36235 0.24 -1.3 3,579,069 + RR42_RS36235 0.38 +0.2 3,579,272 + RR42_RS36235 0.63 -1.8 3,579,310 - RR42_RS36235 0.68 -1.5 3,579,310 - RR42_RS36235 0.68 +1.6 3,579,310 - RR42_RS36235 0.68 -0.8 3,579,412 - RR42_RS36235 0.81 -0.5 3,579,412 - RR42_RS36235 0.81 +1.8
Or see this region's nucleotide sequence