Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33460

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,923,941	+		RR42_RS33450	0.62	-1.7
2,923,942	-		RR42_RS33450	0.62	-1.1
2,924,163	+		RR42_RS33450	0.81	+0.1
2,924,163	+		RR42_RS33450	0.81	-0.7
2,924,163	+		RR42_RS33450	0.81	+0.7
2,924,459	-		RR42_RS33455	0.15	+1.2
2,924,459	-		RR42_RS33455	0.15	+0.6
2,924,641	+		RR42_RS33455	0.60	+0.7
2,924,641	+		RR42_RS33455	0.60	-0.3
2,924,641	+		RR42_RS33455	0.60	+2.4
2,924,642	-		RR42_RS33455	0.60	+1.6
2,924,642	-		RR42_RS33455	0.60	-0.2
2,924,677	-		RR42_RS33455	0.69	+0.3
2,924,966	+		RR42_RS33460	0.11	-1.2
2,925,023	+		RR42_RS33460	0.16	-1.3
2,925,023	+		RR42_RS33460	0.16	+0.4
2,925,038	+		RR42_RS33460	0.17	+0.4
2,925,039	-		RR42_RS33460	0.18	+0.4
2,925,039	-		RR42_RS33460	0.18	+0.6
2,925,059	-		RR42_RS33460	0.19	-0.6
2,925,137	+		RR42_RS33460	0.27	-1.1
2,925,137	+		RR42_RS33460	0.27	-2.3
2,925,137	+		RR42_RS33460	0.27	-0.5
2,925,137	+		RR42_RS33460	0.27	+0.8
2,925,137	+		RR42_RS33460	0.27	-0.7
2,925,137	+		RR42_RS33460	0.27	-1.4
2,925,138	-		RR42_RS33460	0.27	+0.5
2,925,138	-		RR42_RS33460	0.27	-0.5
2,925,145	+		RR42_RS33460	0.27	-1.7
2,925,146	-		RR42_RS33460	0.27	-0.6
2,925,149	+		RR42_RS33460	0.28	-0.4
2,925,170	+		RR42_RS33460	0.30	-1.2
2,925,273	+		RR42_RS33460	0.39	-1.7
2,925,274	-		RR42_RS33460	0.39	-3.0
2,925,276	-		RR42_RS33460	0.39	-0.4
2,925,299	+		RR42_RS33460	0.42	-1.0
2,925,299	+		RR42_RS33460	0.42	-0.1
2,925,300	-		RR42_RS33460	0.42	-1.2
2,925,348	+		RR42_RS33460	0.46	+0.5
2,925,348	+		RR42_RS33460	0.46	-2.5
2,925,348	+		RR42_RS33460	0.46	-0.3
2,925,395	+		RR42_RS33460	0.50	-0.2
2,925,395	+		RR42_RS33460	0.50	+0.7
2,925,396	-		RR42_RS33460	0.50	-0.2
2,925,440	+		RR42_RS33460	0.55	+1.6
2,925,440	+		RR42_RS33460	0.55	-1.1
2,925,440	+		RR42_RS33460	0.55	-3.3
2,925,441	-		RR42_RS33460	0.55	+0.4
2,925,585	+		RR42_RS33460	0.68	-0.1
2,925,585	+		RR42_RS33460	0.68	+0.3
2,925,679	-		RR42_RS33460	0.77	-0.5
2,925,679	-		RR42_RS33460	0.77	-1.4
2,925,680	+		RR42_RS33460	0.77	-0.1
2,925,681	-		RR42_RS33460	0.77	+0.3
2,925,681	-		RR42_RS33460	0.77	+0.9
2,925,918	+				+1.4
2,925,918	+				+1.4
2,925,919	-				-1.4
2,925,919	-				-1.1
2,925,919	-				-3.6
2,925,919	-				+0.2
2,926,391	-				+1.4
2,926,407	+				+0.2
2,926,407	+				+0.7
2,926,407	+				-0.4
2,926,408	-				-1.0
2,926,408	-				-1.1
2,926,434	-		RR42_RS33470	0.14	-0.0
2,926,585	+		RR42_RS33470	0.60	-0.3
2,926,586	-		RR42_RS33470	0.60	+0.5
2,926,586	-		RR42_RS33470	0.60	+1.3
2,926,586	-		RR42_RS33470	0.60	+0.0
2,926,621	+		RR42_RS33470	0.71	+0.2
2,926,622	-		RR42_RS33470	0.71	-0.9
2,926,622	-		RR42_RS33470	0.71	+0.0
2,926,625	+		RR42_RS33470	0.72	-0.2
2,926,625	+		RR42_RS33470	0.72	-0.1
2,926,648	+		RR42_RS33470	0.79	+0.4
2,926,648	+		RR42_RS33470	0.79	+0.4
2,926,648	+		RR42_RS33470	0.79	-0.6
2,926,649	-		RR42_RS33470	0.80	+1.7
2,926,649	-		RR42_RS33470	0.80	+0.5
2,926,649	-		RR42_RS33470	0.80	+1.1
2,926,649	-		RR42_RS33470	0.80	+0.4
2,926,649	-		RR42_RS33470	0.80	-1.1
2,926,652	+		RR42_RS33470	0.80	+0.4
2,926,652	+		RR42_RS33470	0.80	-0.2
2,926,653	-		RR42_RS33470	0.81	-1.8
2,926,690	+				-0.2
2,926,690	+				-1.6
2,926,767	+				+0.3
2,926,768	-				-0.2
2,926,768	-				+0.3
2,926,849	+		RR42_RS33475	0.27	-1.9
2,926,850	-		RR42_RS33475	0.27	+0.5
2,926,850	-		RR42_RS33475	0.27	-0.2
2,926,850	-		RR42_RS33475	0.27	+1.3
2,926,850	-		RR42_RS33475	0.27	-0.1
2,926,850	-		RR42_RS33475	0.27	+0.3
2,926,850	-		RR42_RS33475	0.27	+0.4
2,926,873	+		RR42_RS33475	0.39	+0.0