Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33365

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,899,239	-				-2.9
2,899,239	-				+0.9
2,899,591	+		RR42_RS33360	0.56	-0.8
2,899,591	+		RR42_RS33360	0.56	-0.3
2,899,598	+		RR42_RS33360	0.57	-1.1
2,899,598	+		RR42_RS33360	0.57	-0.3
2,899,599	-		RR42_RS33360	0.57	+0.5
2,899,599	-		RR42_RS33360	0.57	+2.6
2,899,705	+		RR42_RS33360	0.74	+1.0
2,899,705	+		RR42_RS33360	0.74	+0.8
2,899,705	+		RR42_RS33360	0.74	-1.1
2,899,706	-		RR42_RS33360	0.74	+1.4
2,900,040	+				-2.2
2,900,040	+				-0.3
2,900,040	+				+0.4
2,900,041	-				+0.0
2,900,062	-				+0.7
2,900,070	+				+0.8
2,900,070	+				-0.1
2,900,158	+				+0.9
2,900,159	-				+0.1
2,900,159	-				+1.2
2,900,200	+				+1.9
2,900,200	+				+1.7
2,900,200	+				-0.4
2,900,201	-				-0.8
2,900,201	-				+0.9
2,900,279	+		RR42_RS33365	0.10	+1.9
2,900,280	-		RR42_RS33365	0.11	+0.6
2,900,280	-		RR42_RS33365	0.11	-2.1
2,900,369	+		RR42_RS33365	0.23	-0.9
2,900,369	+		RR42_RS33365	0.23	-0.2
2,900,369	+		RR42_RS33365	0.23	-0.3
2,900,369	+		RR42_RS33365	0.23	-0.8
2,900,369	+		RR42_RS33365	0.23	-0.0
2,900,369	+		RR42_RS33365	0.23	+0.0
2,900,369	+		RR42_RS33365	0.23	+0.1
2,900,370	-		RR42_RS33365	0.23	+0.3
2,900,370	-		RR42_RS33365	0.23	+0.6
2,900,370	-		RR42_RS33365	0.23	-0.4
2,900,370	-		RR42_RS33365	0.23	+0.7
2,900,468	+		RR42_RS33365	0.36	-1.2
2,900,469	-		RR42_RS33365	0.36	+0.5
2,900,514	-		RR42_RS33365	0.42	+0.0
2,900,514	-		RR42_RS33365	0.42	-2.3
2,900,586	+		RR42_RS33365	0.52	-1.8
2,900,586	+		RR42_RS33365	0.52	-0.2
2,900,586	+		RR42_RS33365	0.52	+0.7
2,900,586	+		RR42_RS33365	0.52	-0.1
2,900,586	+		RR42_RS33365	0.52	-1.0
2,900,586	+		RR42_RS33365	0.52	-0.5
2,900,587	-		RR42_RS33365	0.52	+0.9
2,900,587	-		RR42_RS33365	0.52	+0.8
2,900,587	-		RR42_RS33365	0.52	-2.7
2,900,587	-		RR42_RS33365	0.52	-2.5
2,900,587	-		RR42_RS33365	0.52	-1.6
2,900,587	-		RR42_RS33365	0.52	+2.3
2,900,587	-		RR42_RS33365	0.52	+0.1
2,900,587	-		RR42_RS33365	0.52	-2.3
2,900,609	+		RR42_RS33365	0.55	-1.6
2,900,610	-		RR42_RS33365	0.56	+0.2
2,900,762	+		RR42_RS33365	0.76	-1.6
2,900,790	+		RR42_RS33365	0.80	+0.5
2,900,799	+		RR42_RS33365	0.81	-0.7
2,900,800	-		RR42_RS33365	0.81	-2.3
2,900,805	+		RR42_RS33365	0.82	-1.0
2,900,805	+		RR42_RS33365	0.82	+1.0
2,900,806	-		RR42_RS33365	0.82	+0.6
2,900,850	+		RR42_RS33365	0.88	-0.6
2,900,851	-		RR42_RS33365	0.88	-0.3
2,900,851	-		RR42_RS33365	0.88	-2.4
2,900,851	-		RR42_RS33365	0.88	+1.4
2,900,851	-		RR42_RS33365	0.88	-2.8
2,900,851	-		RR42_RS33365	0.88	+0.3
2,900,901	+				-1.9
2,900,901	+				-0.1
2,900,901	+				-1.1
2,900,902	-				+1.8
2,900,934	+				-0.4
2,900,935	-				-0.1
2,900,935	-				+0.4
2,901,142	+		RR42_RS33370	0.14	-1.2
2,901,142	+		RR42_RS33370	0.14	+1.4
2,901,143	-		RR42_RS33370	0.14	+0.3
2,901,143	-		RR42_RS33370	0.14	-0.4
2,901,146	+		RR42_RS33370	0.14	+0.0
2,901,146	+		RR42_RS33370	0.14	+1.1
2,901,146	+		RR42_RS33370	0.14	-2.8
2,901,146	+		RR42_RS33370	0.14	-0.3
2,901,147	-		RR42_RS33370	0.14	+0.5
2,901,189	-		RR42_RS33370	0.20	+0.0
2,901,299	+		RR42_RS33370	0.33	-0.1
2,901,299	+		RR42_RS33370	0.33	-3.2
2,901,299	+		RR42_RS33370	0.33	-1.4
2,901,299	+		RR42_RS33370	0.33	-2.5
2,901,300	-		RR42_RS33370	0.33	-1.3
2,901,300	-		RR42_RS33370	0.33	+0.5
2,901,300	-		RR42_RS33370	0.33	+0.8
2,901,300	-		RR42_RS33370	0.33	-0.4
2,901,352	+		RR42_RS33370	0.40	-0.3
2,901,515	+		RR42_RS33370	0.60	+0.7
2,901,515	+		RR42_RS33370	0.60	+0.3
2,901,515	+		RR42_RS33370	0.60	-0.2
2,901,516	-		RR42_RS33370	0.60	-0.6
2,901,516	-		RR42_RS33370	0.60	-0.1
2,901,522	-		RR42_RS33370	0.60	-0.7
2,901,794	+				-1.1
2,901,794	+				-0.5
2,901,795	-				+3.1
2,901,899	+				+0.0
2,901,899	+				+0.4
2,901,930	+				+0.4
2,901,930	+				-2.8
2,901,931	-				+1.9
2,901,931	-				-1.3
2,901,931	-				+2.0