Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33290

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,882,456	+				+0.6
2,882,457	-				+0.3
2,882,626	+		RR42_RS33285	0.34	+1.1
2,882,627	-		RR42_RS33285	0.34	-0.9
2,882,632	+		RR42_RS33285	0.35	+1.0
2,882,633	-		RR42_RS33285	0.35	+0.4
2,882,707	-		RR42_RS33285	0.52	-1.4
2,882,854	+		RR42_RS33285	0.83	+0.4
2,883,088	-				-1.5
2,883,131	+				+1.1
2,883,132	-				+1.6
2,883,162	+				+0.2
2,883,162	+				-1.4
2,883,162	+				-0.3
2,883,163	-				+2.1
2,883,194	+				-0.7
2,883,270	+				+0.3
2,883,270	+				-1.1
2,883,271	-				-0.7
2,883,344	+				-0.1
2,883,348	-				-1.9
2,883,348	-				-0.3
2,883,642	-		RR42_RS33290	0.19	+0.1
2,883,642	-		RR42_RS33290	0.19	+0.9
2,883,642	-		RR42_RS33290	0.19	-1.0
2,883,849	-		RR42_RS33290	0.30	+0.5
2,883,881	+		RR42_RS33290	0.32	-0.3
2,884,008	-		RR42_RS33290	0.38	-0.1
2,884,152	+		RR42_RS33290	0.45	+0.1
2,884,153	-		RR42_RS33290	0.45	+0.3
2,884,250	-		RR42_RS33290	0.50	-1.7
2,884,421	+		RR42_RS33290	0.59	+0.8
2,884,421	+		RR42_RS33290	0.59	-0.4
2,884,421	+		RR42_RS33290	0.59	-2.3
2,884,421	+		RR42_RS33290	0.59	-2.4
2,884,422	-		RR42_RS33290	0.59	+0.6
2,884,422	-		RR42_RS33290	0.59	-0.6
2,884,422	-		RR42_RS33290	0.59	+0.6
2,884,443	-		RR42_RS33290	0.60	-0.2
2,884,443	-		RR42_RS33290	0.60	+0.8
2,884,517	+		RR42_RS33290	0.64	+1.5
2,884,517	+		RR42_RS33290	0.64	+0.8
2,884,518	-		RR42_RS33290	0.64	-1.1
2,884,535	+		RR42_RS33290	0.65	-0.2
2,884,536	-		RR42_RS33290	0.65	-1.1
2,884,536	-		RR42_RS33290	0.65	-0.2
2,884,550	+		RR42_RS33290	0.65	+0.9
2,884,550	+		RR42_RS33290	0.65	+0.2
2,884,550	+		RR42_RS33290	0.65	-2.7
2,884,550	+		RR42_RS33290	0.65	-0.0
2,884,551	-		RR42_RS33290	0.65	+0.5
2,884,551	-		RR42_RS33290	0.65	+2.1
2,884,592	-		RR42_RS33290	0.68	+0.2
2,884,612	+		RR42_RS33290	0.69	-0.7
2,884,612	+		RR42_RS33290	0.69	-0.8
2,884,612	+		RR42_RS33290	0.69	-0.7
2,884,616	+		RR42_RS33290	0.69	-0.9
2,884,617	-		RR42_RS33290	0.69	+0.7
2,884,617	-		RR42_RS33290	0.69	-2.9
2,884,617	-		RR42_RS33290	0.69	-1.0
2,884,617	-		RR42_RS33290	0.69	+0.2
2,884,661	+		RR42_RS33290	0.71	+0.3
2,884,661	+		RR42_RS33290	0.71	-2.6
2,884,661	+		RR42_RS33290	0.71	+0.5
2,884,661	+		RR42_RS33290	0.71	-1.7
2,884,661	+		RR42_RS33290	0.71	+0.5
2,884,661	+		RR42_RS33290	0.71	+0.1
2,884,661	+		RR42_RS33290	0.71	-3.0
2,884,661	+		RR42_RS33290	0.71	+2.5
2,884,661	+		RR42_RS33290	0.71	-2.8
2,884,661	+		RR42_RS33290	0.71	+1.1
2,884,662	-		RR42_RS33290	0.71	+0.6
2,884,662	-		RR42_RS33290	0.71	+1.2
2,884,662	-		RR42_RS33290	0.71	+0.6
2,884,662	-		RR42_RS33290	0.71	-2.6
2,884,662	-		RR42_RS33290	0.71	+0.6
2,884,662	-		RR42_RS33290	0.71	-0.7
2,885,059	+				-0.6
2,885,060	-				+3.9
2,885,168	+				-1.1
2,885,199	-				-1.4
2,885,232	-				+0.3
2,885,232	-				+1.1
2,885,232	-				+0.4
2,885,383	+		RR42_RS33295	0.13	-0.3
2,885,383	+		RR42_RS33295	0.13	+0.2
2,885,384	-		RR42_RS33295	0.13	-2.3
2,885,384	-		RR42_RS33295	0.13	-1.1
2,885,394	+		RR42_RS33295	0.16	+0.7
2,885,394	+		RR42_RS33295	0.16	+2.7
2,885,395	-		RR42_RS33295	0.16	-1.0
2,885,395	-		RR42_RS33295	0.16	+0.8
2,885,395	-		RR42_RS33295	0.16	+0.6
2,885,406	+		RR42_RS33295	0.18	+1.4
2,885,406	+		RR42_RS33295	0.18	-1.1
2,885,407	-		RR42_RS33295	0.18	+0.2
2,885,407	-		RR42_RS33295	0.18	+0.7
2,885,407	-		RR42_RS33295	0.18	+0.3
2,885,478	+		RR42_RS33295	0.34	-0.7
2,885,479	-		RR42_RS33295	0.34	-0.3
2,885,538	+		RR42_RS33295	0.47	+0.7
2,885,538	+		RR42_RS33295	0.47	+0.0
2,885,538	+		RR42_RS33295	0.47	-0.0
2,885,539	-		RR42_RS33295	0.47	-0.6
2,885,539	-		RR42_RS33295	0.47	-1.9
2,885,539	-		RR42_RS33295	0.47	+1.8
2,885,539	-		RR42_RS33295	0.47	-0.6
2,885,539	-		RR42_RS33295	0.47	+0.3
2,885,539	-		RR42_RS33295	0.47	+0.0
2,885,580	+		RR42_RS33295	0.56	-0.4
2,885,580	+		RR42_RS33295	0.56	+0.3
2,885,597	+		RR42_RS33295	0.60	-1.0
2,885,597	+		RR42_RS33295	0.60	-0.1
2,885,597	+		RR42_RS33295	0.60	+0.8
2,885,597	+		RR42_RS33295	0.60	-0.5
2,885,688	+		RR42_RS33295	0.79	+0.9
2,885,689	-		RR42_RS33295	0.79	+0.4
2,885,730	+		RR42_RS33295	0.88	+0.8
2,885,731	-		RR42_RS33295	0.89	+2.1
2,885,731	-		RR42_RS33295	0.89	-2.2
2,885,766	+				-0.8
2,885,782	-				-1.8
2,885,800	-				-1.0
2,885,971	+				-0.9
2,886,063	+				-2.0
2,886,194	-				-1.1
2,886,194	-				-0.0
2,886,206	-				-2.3
2,886,224	-				-1.3