Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33115

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,835,656	+		RR42_RS33105	0.71	-0.8
2,835,657	-		RR42_RS33105	0.71	-0.4
2,835,870	+		RR42_RS33105	0.88	+0.0
2,835,870	+		RR42_RS33105	0.88	-2.7
2,835,929	+				+1.0
2,835,929	+				-1.5
2,835,929	+				-0.5
2,835,929	+				+0.4
2,835,930	-				+1.1
2,835,930	-				-0.5
2,835,930	-				-0.1
2,835,930	-				+0.4
2,835,977	+				-0.5
2,835,978	-				-0.3
2,835,978	-				-0.0
2,836,279	-				-0.4
2,836,279	-				+0.6
2,836,383	+		RR42_RS33110	0.37	+0.8
2,836,389	+		RR42_RS33110	0.39	+0.2
2,836,389	+		RR42_RS33110	0.39	+0.6
2,836,390	-		RR42_RS33110	0.39	-0.9
2,836,390	-		RR42_RS33110	0.39	+0.4
2,836,390	-		RR42_RS33110	0.39	-1.7
2,836,390	-		RR42_RS33110	0.39	-0.1
2,836,390	-		RR42_RS33110	0.39	+1.4
2,836,390	-		RR42_RS33110	0.39	-1.4
2,836,461	+		RR42_RS33110	0.64	-0.7
2,836,541	+				-0.0
2,836,541	+				-2.6
2,836,541	+				-0.4
2,836,542	-				+0.2
2,836,542	-				-0.6
2,836,542	-				-0.5
2,836,542	-				-0.7
2,836,797	+		RR42_RS33115	0.22	-0.1
2,836,797	+		RR42_RS33115	0.22	-1.1
2,836,798	-		RR42_RS33115	0.22	-2.4
2,837,035	-		RR42_RS33115	0.45	-0.6
2,837,035	-		RR42_RS33115	0.45	-2.2
2,837,205	+		RR42_RS33115	0.61	-1.1
2,837,205	+		RR42_RS33115	0.61	-1.9
2,837,310	+		RR42_RS33115	0.72	-1.2
2,837,310	+		RR42_RS33115	0.72	+0.9
2,837,311	-		RR42_RS33115	0.72	+0.1
2,837,311	-		RR42_RS33115	0.72	-2.5
2,837,311	-		RR42_RS33115	0.72	-0.1
2,837,311	-		RR42_RS33115	0.72	+0.4
2,837,311	-		RR42_RS33115	0.72	-0.7
2,837,311	-		RR42_RS33115	0.72	+0.6
2,837,314	+		RR42_RS33115	0.72	-3.6
2,837,314	+		RR42_RS33115	0.72	-3.2
2,837,314	+		RR42_RS33115	0.72	+0.6
2,837,315	-		RR42_RS33115	0.72	-0.1
2,837,344	-		RR42_RS33115	0.75	+2.9
2,837,409	+		RR42_RS33115	0.81	+0.1
2,837,657	+		RR42_RS33120	0.11	-0.4
2,837,661	-		RR42_RS33120	0.11	+0.6
2,837,661	-		RR42_RS33120	0.11	+1.0
2,837,850	+		RR42_RS33120	0.46	-0.6
2,838,160	+				-1.7
2,838,419	+		RR42_RS33125	0.26	-1.1
2,838,420	-		RR42_RS33125	0.26	-0.4
2,838,420	-		RR42_RS33125	0.26	+2.8
2,838,420	-		RR42_RS33125	0.26	+0.2
2,838,421	+		RR42_RS33125	0.27	-0.0
2,838,421	+		RR42_RS33125	0.27	-0.7
2,838,421	+		RR42_RS33125	0.27	-3.1
2,838,421	+		RR42_RS33125	0.27	+0.3
2,838,421	+		RR42_RS33125	0.27	-0.9
2,838,421	+		RR42_RS33125	0.27	-2.1
2,838,422	-		RR42_RS33125	0.27	+0.9
2,838,422	-		RR42_RS33125	0.27	+2.7
2,838,422	-		RR42_RS33125	0.27	+0.3
2,838,422	-		RR42_RS33125	0.27	-0.2
2,838,422	-		RR42_RS33125	0.27	-0.8
2,838,422	-		RR42_RS33125	0.27	+0.4
2,838,479	-		RR42_RS33125	0.32	-1.1
2,838,563	+		RR42_RS33125	0.40	+0.0
2,838,564	-		RR42_RS33125	0.40	+1.9