Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33100

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,832,749	-				+0.1
2,832,772	+				+0.1
2,832,772	+				-1.7
2,832,773	-				-2.6
2,832,773	-				-1.4
2,832,823	+				+1.7
2,832,824	-				-2.1
2,832,824	-				-0.4
2,832,920	-		RR42_RS33095	0.19	+0.3
2,832,920	-		RR42_RS33095	0.19	+0.1
2,832,920	-		RR42_RS33095	0.19	-0.1
2,832,920	-		RR42_RS33095	0.19	-0.0
2,832,954	+		RR42_RS33095	0.23	-0.1
2,832,955	-		RR42_RS33095	0.23	+0.9
2,832,955	-		RR42_RS33095	0.23	-1.2
2,832,955	-		RR42_RS33095	0.23	-2.9
2,833,132	+		RR42_RS33095	0.42	+1.7
2,833,132	+		RR42_RS33095	0.42	-1.7
2,833,132	+		RR42_RS33095	0.42	+0.6
2,833,287	+		RR42_RS33095	0.60	+0.9
2,833,287	+		RR42_RS33095	0.60	-1.9
2,833,288	-		RR42_RS33095	0.60	+1.5
2,833,288	-		RR42_RS33095	0.60	+1.0
2,833,288	-		RR42_RS33095	0.60	+0.3
2,833,288	-		RR42_RS33095	0.60	+0.4
2,833,288	-		RR42_RS33095	0.60	+0.5
2,833,356	+		RR42_RS33095	0.67	-0.1
2,833,356	+		RR42_RS33095	0.67	+0.2
2,833,356	+		RR42_RS33095	0.67	+1.1
2,833,357	-		RR42_RS33095	0.67	+1.0
2,833,357	-		RR42_RS33095	0.67	+0.1
2,833,357	-		RR42_RS33095	0.67	+0.1
2,833,357	-		RR42_RS33095	0.67	-3.4
2,833,512	+		RR42_RS33095	0.84	-0.3
2,833,512	+		RR42_RS33095	0.84	-0.1
2,833,512	+		RR42_RS33095	0.84	-1.0
2,833,512	+		RR42_RS33095	0.84	+0.5
2,833,513	-		RR42_RS33095	0.85	+0.1
2,833,513	-		RR42_RS33095	0.85	-3.0
2,833,513	-		RR42_RS33095	0.85	-0.6
2,833,518	+		RR42_RS33095	0.85	+0.7
2,833,518	+		RR42_RS33095	0.85	+1.7
2,833,518	+		RR42_RS33095	0.85	-1.5
2,833,518	+		RR42_RS33095	0.85	+0.3
2,833,667	+				-1.9
2,833,754	+				+0.5
2,833,771	-				-0.3
2,833,771	-				-0.8
2,833,800	-				-0.8
2,833,911	-		RR42_RS33100	0.19	-0.4
2,833,911	-		RR42_RS33100	0.19	+0.1
2,833,930	-		RR42_RS33100	0.21	-2.7
2,834,128	+		RR42_RS33100	0.44	-0.8
2,834,128	+		RR42_RS33100	0.44	-0.9
2,834,128	+		RR42_RS33100	0.44	+0.9
2,834,129	-		RR42_RS33100	0.44	+0.7
2,834,129	-		RR42_RS33100	0.44	+0.0
2,834,129	-		RR42_RS33100	0.44	+2.9
2,834,129	-		RR42_RS33100	0.44	-1.0
2,834,129	-		RR42_RS33100	0.44	+1.0
2,834,129	-		RR42_RS33100	0.44	-0.9
2,834,147	+		RR42_RS33100	0.46	+2.6
2,834,147	+		RR42_RS33100	0.46	-1.9
2,834,147	+		RR42_RS33100	0.46	+2.2
2,834,148	-		RR42_RS33100	0.46	+0.6
2,834,367	+		RR42_RS33100	0.72	-2.1
2,834,493	-		RR42_RS33100	0.86	+1.1
2,834,504	+		RR42_RS33100	0.88	-2.2
2,834,505	-		RR42_RS33100	0.88	-0.2
2,834,567	-				+0.2
2,834,628	+				-0.3
2,834,693	-				-0.1
2,834,867	+				-1.1
2,834,867	+				-0.3
2,834,867	+				-0.7
2,834,867	+				+0.5
2,834,868	-				+0.3
2,834,868	-				+0.6
2,834,868	-				+0.0
2,835,089	+		RR42_RS33105	0.27	+0.4
2,835,089	+		RR42_RS33105	0.27	-0.9
2,835,090	-		RR42_RS33105	0.27	+1.0
2,835,119	+		RR42_RS33105	0.29	-0.2
2,835,119	+		RR42_RS33105	0.29	-0.7
2,835,119	+		RR42_RS33105	0.29	-1.6
2,835,120	-		RR42_RS33105	0.29	+0.4
2,835,120	-		RR42_RS33105	0.29	-1.9
2,835,272	+		RR42_RS33105	0.41	-0.8
2,835,272	+		RR42_RS33105	0.41	+0.8
2,835,273	-		RR42_RS33105	0.41	+0.4
2,835,273	-		RR42_RS33105	0.41	-0.1
2,835,273	-		RR42_RS33105	0.41	+0.9
2,835,332	+		RR42_RS33105	0.46	-1.4
2,835,332	+		RR42_RS33105	0.46	-0.2
2,835,332	+		RR42_RS33105	0.46	+1.1
2,835,333	-		RR42_RS33105	0.46	+0.7
2,835,333	-		RR42_RS33105	0.46	-0.1
2,835,333	-		RR42_RS33105	0.46	-0.3
2,835,335	+		RR42_RS33105	0.46	+0.3
2,835,335	+		RR42_RS33105	0.46	-1.3
2,835,335	+		RR42_RS33105	0.46	-1.4
2,835,376	+		RR42_RS33105	0.49	-1.0
2,835,378	-		RR42_RS33105	0.49	-2.2
2,835,521	+		RR42_RS33105	0.61	-3.8