Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32220

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,614,220	+		RR42_RS32215	0.11	+0.5
2,614,220	+		RR42_RS32215	0.11	-0.5
2,614,221	-		RR42_RS32215	0.11	-1.0
2,614,221	-		RR42_RS32215	0.11	-1.9
2,614,245	+		RR42_RS32215	0.14	-0.5
2,614,471	-		RR42_RS32215	0.39	+0.3
2,614,471	-		RR42_RS32215	0.39	-1.7
2,614,471	-		RR42_RS32215	0.39	+0.8
2,614,545	+		RR42_RS32215	0.48	-0.3
2,614,563	-		RR42_RS32215	0.50	-0.4
2,614,698	+		RR42_RS32215	0.65	-0.5
2,614,699	-		RR42_RS32215	0.66	-2.2
2,614,699	-		RR42_RS32215	0.66	-1.0
2,614,734	+		RR42_RS32215	0.70	-1.3
2,614,734	+		RR42_RS32215	0.70	-0.9
2,614,735	-		RR42_RS32215	0.70	-0.7
2,615,028	+				+0.8
2,615,028	+				-0.0
2,615,044	+				-0.8
2,615,044	+				+0.7
2,615,302	+		RR42_RS32220	0.20	-1.5
2,615,302	+		RR42_RS32220	0.20	+1.2
2,615,302	+		RR42_RS32220	0.20	+0.8
2,615,303	-		RR42_RS32220	0.20	-0.8
2,615,303	-		RR42_RS32220	0.20	-0.1
2,615,475	+		RR42_RS32220	0.35	+0.9
2,615,779	+		RR42_RS32220	0.62	-3.5
2,615,780	-		RR42_RS32220	0.62	-0.5
2,615,901	-		RR42_RS32220	0.73	-0.7
2,615,916	-		RR42_RS32220	0.74	-2.6
2,615,916	-		RR42_RS32220	0.74	-2.7
2,615,964	-		RR42_RS32220	0.78	+0.3
2,616,048	-		RR42_RS32220	0.86	+0.1
2,616,048	-		RR42_RS32220	0.86	-1.0
2,616,069	-		RR42_RS32220	0.87	-3.0
2,616,119	+				+0.9
2,616,309	-				-0.0
2,616,314	-				-0.3
2,616,545	+		RR42_RS32225	0.31	-0.6
2,616,545	+		RR42_RS32225	0.31	-1.4
2,616,545	+		RR42_RS32225	0.31	+0.8
2,616,545	+		RR42_RS32225	0.31	-0.1
2,616,545	+		RR42_RS32225	0.31	+0.2
2,616,545	+		RR42_RS32225	0.31	-0.4
2,616,545	+		RR42_RS32225	0.31	-0.5
2,616,545	+		RR42_RS32225	0.31	-0.1
2,616,546	-		RR42_RS32225	0.31	-1.3
2,616,546	-		RR42_RS32225	0.31	+0.1
2,616,546	-		RR42_RS32225	0.31	+1.0
2,616,583	-		RR42_RS32225	0.35	+3.0
2,616,583	-		RR42_RS32225	0.35	+0.1
2,616,583	-		RR42_RS32225	0.35	-1.5
2,616,583	-		RR42_RS32225	0.35	+0.8
2,616,583	-		RR42_RS32225	0.35	-0.7
2,616,664	+		RR42_RS32225	0.43	-0.1
2,616,664	+		RR42_RS32225	0.43	-0.1
2,616,665	-		RR42_RS32225	0.43	+0.5
2,616,804	-		RR42_RS32225	0.57	+0.3
2,616,896	+		RR42_RS32225	0.66	-0.2
2,616,897	-		RR42_RS32225	0.66	+0.5
2,616,897	-		RR42_RS32225	0.66	+0.4
2,616,897	-		RR42_RS32225	0.66	+1.1
2,617,002	-		RR42_RS32225	0.77	-2.2
2,617,025	+		RR42_RS32225	0.79	+0.0
2,617,025	+		RR42_RS32225	0.79	-1.3
2,617,025	+		RR42_RS32225	0.79	+0.8
2,617,026	-		RR42_RS32225	0.79	-0.1
2,617,026	-		RR42_RS32225	0.79	+0.2