Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32080

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,573,479	+		RR42_RS32075	0.60	-0.4
2,573,479	+		RR42_RS32075	0.60	-0.5
2,573,635	+		RR42_RS32075	0.71	-0.7
2,574,131	-				-1.5
2,574,337	+				-2.2
2,574,409	-				-3.4
2,574,563	+				-0.2
2,574,564	-				-1.5
2,574,770	-				+0.5
2,574,802	-				-1.2
2,575,309	+		RR42_RS32080	0.11	+0.3
2,575,310	-		RR42_RS32080	0.11	+1.1
2,575,310	-		RR42_RS32080	0.11	-0.5
2,575,310	-		RR42_RS32080	0.11	-2.2
2,575,423	-		RR42_RS32080	0.13	+0.8
2,575,787	-		RR42_RS32080	0.17	+0.8
2,576,382	-		RR42_RS32080	0.25	+1.1
2,576,628	+		RR42_RS32080	0.28	+2.3
2,576,900	-		RR42_RS32080	0.31	+0.3
2,577,120	+		RR42_RS32080	0.34	-0.3
2,577,121	-		RR42_RS32080	0.34	+1.4
2,577,213	+		RR42_RS32080	0.35	+0.5
2,577,242	-		RR42_RS32080	0.35	-0.9
2,577,242	-		RR42_RS32080	0.35	+1.2
2,577,320	+		RR42_RS32080	0.36	-0.3
2,577,320	+		RR42_RS32080	0.36	+0.4
2,577,321	-		RR42_RS32080	0.36	+0.7
2,577,322	+		RR42_RS32080	0.36	+2.7
2,577,322	+		RR42_RS32080	0.36	-0.4
2,577,322	+		RR42_RS32080	0.36	-0.7
2,577,323	-		RR42_RS32080	0.36	+0.3
2,577,323	-		RR42_RS32080	0.36	-0.4
2,577,323	-		RR42_RS32080	0.36	-1.2
2,577,359	-		RR42_RS32080	0.37	+0.7
2,577,359	-		RR42_RS32080	0.37	+0.4
2,577,377	-		RR42_RS32080	0.37	+1.2
2,577,703	+		RR42_RS32080	0.41	+1.7
2,577,704	-		RR42_RS32080	0.41	+0.6
2,577,736	+		RR42_RS32080	0.42	+2.4
2,577,778	+		RR42_RS32080	0.42	-0.2
2,577,779	-		RR42_RS32080	0.42	+1.3
2,577,996	-		RR42_RS32080	0.45	-2.3
2,578,028	-		RR42_RS32080	0.45	+0.1
2,578,028	-		RR42_RS32080	0.45	-3.0
2,578,057	+		RR42_RS32080	0.46	+0.6
2,578,058	-		RR42_RS32080	0.46	+1.2
2,578,450	+		RR42_RS32080	0.50	+0.6
2,578,453	+		RR42_RS32080	0.50	-0.9
2,578,453	+		RR42_RS32080	0.50	-0.4
2,578,453	+		RR42_RS32080	0.50	+1.3
2,578,454	-		RR42_RS32080	0.50	+0.2
2,578,454	-		RR42_RS32080	0.50	-2.6
2,578,517	-		RR42_RS32080	0.51	-0.4
2,578,537	+		RR42_RS32080	0.52	-0.8
2,578,538	-		RR42_RS32080	0.52	-1.2
2,578,538	-		RR42_RS32080	0.52	-1.6
2,578,852	-		RR42_RS32080	0.55	+0.9
2,579,200	+		RR42_RS32080	0.60	+0.0
2,579,317	+		RR42_RS32080	0.61	-0.2
2,579,318	-		RR42_RS32080	0.61	-0.6
2,579,413	+		RR42_RS32080	0.62	+0.6
2,579,413	+		RR42_RS32080	0.62	+0.4
2,579,638	+		RR42_RS32080	0.65	-2.0
2,579,638	+		RR42_RS32080	0.65	+0.2
2,579,639	-		RR42_RS32080	0.65	+2.4
2,579,639	-		RR42_RS32080	0.65	-0.2
2,579,639	-		RR42_RS32080	0.65	+0.0
2,579,690	-		RR42_RS32080	0.66	+0.1
2,580,316	-		RR42_RS32080	0.74	-0.5
2,580,322	-		RR42_RS32080	0.74	-1.5
2,580,389	+		RR42_RS32080	0.75	-0.6
2,580,389	+		RR42_RS32080	0.75	+2.3
2,580,394	+		RR42_RS32080	0.75	+0.6
2,580,653	+		RR42_RS32080	0.78	+0.3
2,580,653	+		RR42_RS32080	0.78	-1.7
2,581,184	+		RR42_RS32080	0.84	-0.7
2,581,239	-		RR42_RS32080	0.85	-0.3
2,581,653	+				-0.7
2,581,744	+				-0.2
2,581,745	-				-1.7
2,581,745	-				+0.8
2,581,801	+				-0.1
2,581,802	-				-0.4
2,581,805	+				-2.1
2,581,805	+				+0.8
2,581,805	+				-1.1
2,581,805	+				-0.4
2,581,805	+				+0.1
2,581,806	-				-0.5
2,581,806	-				+0.3
2,581,806	-				-4.7
2,581,806	-				-0.4
2,581,806	-				-0.1
2,581,815	-				-2.7
2,581,829	+				-2.6
2,581,856	+				-0.7
2,581,856	+				+1.0
2,581,856	+				+0.4
2,581,958	+				-1.2
2,582,004	+				+0.3
2,582,005	-				-1.5
2,582,009	+				-1.5
2,582,009	+				-3.2
2,582,268	+				+0.8
2,582,486	-		RR42_RS32085	0.23	-1.2
2,582,690	-				+0.8
2,582,854	-		RR42_RS32090	0.78	-0.5
2,582,854	-		RR42_RS32090	0.78	+1.3
2,582,939	+				-0.8
2,582,940	-				+0.3
2,582,948	+				-0.7
2,582,948	+				+0.6
2,582,949	-				+0.1
2,582,949	-				-2.3
2,582,950	+				-0.2
2,582,984	+				+1.6
2,582,984	+				-0.7
2,582,984	+				-1.2
2,582,984	+				-0.7
2,583,017	+				+1.7
2,583,017	+				+0.5
2,583,017	+				-0.9
2,583,018	-				-0.7
2,583,049	+				+0.6
2,583,050	-				-1.6
2,583,120	+				+0.4
2,583,120	+				-0.6
2,583,120	+				-0.8
2,583,120	+				-1.3
2,583,120	+				-0.2
2,583,121	-				-0.6
2,583,121	-				-0.6
2,583,121	-				+1.2
2,583,121	-				+1.5
2,583,195	+				-0.9
2,583,226	+				+0.6