Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31805 and RR42_RS31810 are separated by 341 nucleotides RR42_RS31810 and RR42_RS31815 are separated by 18 nucleotides RR42_RS31815 and RR42_RS31820 are separated by 51 nucleotides RR42_RS31820 and RR42_RS31825 are separated by 56 nucleotides
RR42_RS31805: RR42_RS31805 - hypothetical protein, at 2,514,425 to 2,514,649
_RS31805
RR42_RS31810: RR42_RS31810 - hypothetical protein, at 2,514,991 to 2,515,545
_RS31810
RR42_RS31815: RR42_RS31815 - steroid delta-isomerase, at 2,515,564 to 2,515,953
_RS31815
RR42_RS31820: RR42_RS31820 - short-chain dehydrogenase, at 2,516,005 to 2,516,790
_RS31820
RR42_RS31825: RR42_RS31825 - 3-oxoacyl-ACP reductase, at 2,516,847 to 2,517,695
_RS31825
Position (kb)
2515
2516 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2514.701 kb on - strand at 2514.805 kb on - strand at 2514.805 kb on - strand at 2514.805 kb on - strand at 2514.857 kb on - strand at 2514.857 kb on - strand at 2514.913 kb on + strand at 2514.914 kb on - strand at 2514.984 kb on - strand at 2514.992 kb on + strand at 2514.993 kb on - strand at 2515.072 kb on + strand, within RR42_RS31810 at 2515.401 kb on - strand, within RR42_RS31810 at 2515.566 kb on - strand at 2515.686 kb on - strand, within RR42_RS31815 at 2515.778 kb on + strand, within RR42_RS31815 at 2515.778 kb on + strand, within RR42_RS31815 at 2516.079 kb on - strand at 2516.208 kb on + strand, within RR42_RS31820 at 2516.209 kb on - strand, within RR42_RS31820 at 2516.253 kb on - strand, within RR42_RS31820 at 2516.339 kb on + strand, within RR42_RS31820 at 2516.784 kb on - strand at 2516.902 kb on + strand at 2516.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 2,514,701 - +1.1 2,514,805 - +0.0 2,514,805 - -2.4 2,514,805 - +1.9 2,514,857 - -2.4 2,514,857 - +1.1 2,514,913 + -0.6 2,514,914 - +0.7 2,514,984 - -1.5 2,514,992 + +0.2 2,514,993 - +0.5 2,515,072 + RR42_RS31810 0.15 +1.3 2,515,401 - RR42_RS31810 0.74 +0.1 2,515,566 - -2.1 2,515,686 - RR42_RS31815 0.31 +0.4 2,515,778 + RR42_RS31815 0.55 +0.7 2,515,778 + RR42_RS31815 0.55 +0.9 2,516,079 - -0.7 2,516,208 + RR42_RS31820 0.26 +0.4 2,516,209 - RR42_RS31820 0.26 +1.3 2,516,253 - RR42_RS31820 0.32 -0.3 2,516,339 + RR42_RS31820 0.42 -0.3 2,516,784 - +0.7 2,516,902 + -0.3 2,516,902 + +1.0
Or see this region's nucleotide sequence