Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31445

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,435,194	+				-1.9
2,435,253	-		RR42_RS31435	0.23	+0.9
2,435,664	-				-0.6
2,435,761	+				+0.1
2,435,761	+				-0.3
2,435,761	+				-1.2
2,435,762	-				-1.1
2,435,762	-				-0.9
2,435,771	+				-0.1
2,435,771	+				-3.4
2,435,772	-				+0.0
2,435,813	+		RR42_RS31440	0.17	+1.7
2,435,813	+		RR42_RS31440	0.17	-1.2
2,435,813	+		RR42_RS31440	0.17	-0.2
2,435,814	-		RR42_RS31440	0.18	-0.9
2,435,814	-		RR42_RS31440	0.18	-0.6
2,435,814	-		RR42_RS31440	0.18	+0.8
2,435,814	-		RR42_RS31440	0.18	+0.8
2,435,814	-		RR42_RS31440	0.18	-2.0
2,435,814	-		RR42_RS31440	0.18	+1.6
2,435,814	-		RR42_RS31440	0.18	+0.7
2,435,814	-		RR42_RS31440	0.18	+0.4
2,436,035	-				+1.3
2,436,092	+				+1.0
2,436,093	-				-0.5
2,436,093	-				+1.5
2,436,226	-		RR42_RS31445	0.10	-1.0
2,436,226	-		RR42_RS31445	0.10	+0.1
2,436,257	+		RR42_RS31445	0.13	-3.2
2,436,258	-		RR42_RS31445	0.13	-0.3
2,436,270	-		RR42_RS31445	0.14	-0.0
2,436,469	-		RR42_RS31445	0.33	+0.3
2,436,489	+		RR42_RS31445	0.34	-1.6
2,436,489	+		RR42_RS31445	0.34	-0.6
2,436,490	-		RR42_RS31445	0.35	-0.9
2,436,490	-		RR42_RS31445	0.35	+3.0
2,436,490	-		RR42_RS31445	0.35	+0.2
2,436,499	-		RR42_RS31445	0.35	-0.2
2,436,499	-		RR42_RS31445	0.35	+0.3
2,436,501	+		RR42_RS31445	0.36	+1.8
2,436,519	+		RR42_RS31445	0.37	+0.4
2,436,520	-		RR42_RS31445	0.37	-1.7
2,436,520	-		RR42_RS31445	0.37	-0.1
2,436,551	+		RR42_RS31445	0.40	+0.3
2,436,613	-		RR42_RS31445	0.46	+0.7
2,436,703	-		RR42_RS31445	0.54	-0.3
2,436,721	-		RR42_RS31445	0.56	+1.3
2,436,753	+		RR42_RS31445	0.58	+0.1
2,436,852	+		RR42_RS31445	0.67	-1.8
2,436,853	-		RR42_RS31445	0.68	-0.3
2,436,853	-		RR42_RS31445	0.68	+1.1
2,436,853	-		RR42_RS31445	0.68	+1.6
2,436,890	+		RR42_RS31445	0.71	-0.2
2,436,890	+		RR42_RS31445	0.71	+0.2
2,436,890	+		RR42_RS31445	0.71	-0.4
2,436,906	+		RR42_RS31445	0.72	-0.0
2,436,906	+		RR42_RS31445	0.72	+0.0
2,436,906	+		RR42_RS31445	0.72	+1.1
2,436,943	+		RR42_RS31445	0.76	-0.8
2,436,943	+		RR42_RS31445	0.76	-4.4
2,436,944	-		RR42_RS31445	0.76	-1.8
2,436,944	-		RR42_RS31445	0.76	-0.3
2,436,944	-		RR42_RS31445	0.76	+0.3
2,436,944	-		RR42_RS31445	0.76	-0.1
2,437,083	+		RR42_RS31445	0.89	+1.0
2,437,083	+		RR42_RS31445	0.89	-0.8
2,437,125	+				+1.0
2,437,126	-				-2.9
2,437,330	-		RR42_RS31450	0.12	-0.4
2,437,333	+		RR42_RS31450	0.12	-2.2
2,437,333	+		RR42_RS31450	0.12	+0.1
2,437,334	-		RR42_RS31450	0.13	-0.5
2,437,354	-		RR42_RS31450	0.15	+1.5
2,437,367	-		RR42_RS31450	0.17	+0.4
2,437,542	+		RR42_RS31450	0.41	+0.1
2,437,543	+		RR42_RS31450	0.41	+0.1
2,437,544	-		RR42_RS31450	0.41	-0.3
2,437,544	-		RR42_RS31450	0.41	+0.2
2,437,544	-		RR42_RS31450	0.41	+1.7
2,437,576	+		RR42_RS31450	0.46	-1.0
2,437,577	-		RR42_RS31450	0.46	+2.8
2,437,577	-		RR42_RS31450	0.46	-0.0
2,437,577	-		RR42_RS31450	0.46	+0.0
2,437,730	+		RR42_RS31450	0.67	+0.6
2,437,742	+		RR42_RS31450	0.69	-1.2
2,437,796	-		RR42_RS31450	0.76	-0.4
2,437,894	+		RR42_RS31450	0.89	-0.2
2,437,895	-		RR42_RS31450	0.90	-0.4
2,437,909	+				-0.3
2,437,909	+				-2.8
2,437,910	-				-0.1
2,438,103	+				-0.4
2,438,103	+				+0.4
2,438,168	+				+0.2