Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30040

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30035 and RR42_RS30040 overlap by 20 nucleotidesRR42_RS30040 and RR42_RS30045 overlap by 14 nucleotides RR42_RS30035: RR42_RS30035 - hemolysin D, at 2,110,210 to 2,111,259 _RS30035 RR42_RS30040: RR42_RS30040 - fusaric acid resistance protein, at 2,111,240 to 2,113,264 _RS30040 RR42_RS30045: RR42_RS30045 - RND transporter, at 2,113,251 to 2,114,789 _RS30045 Position (kb) 2111 2112 2113 2114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2110.603 kb on + strand, within RR42_RS30035at 2110.603 kb on + strand, within RR42_RS30035at 2110.604 kb on - strand, within RR42_RS30035at 2110.657 kb on + strand, within RR42_RS30035at 2110.657 kb on + strand, within RR42_RS30035at 2110.658 kb on - strand, within RR42_RS30035at 2110.931 kb on + strand, within RR42_RS30035at 2110.932 kb on - strand, within RR42_RS30035at 2111.017 kb on + strand, within RR42_RS30035at 2111.018 kb on - strand, within RR42_RS30035at 2111.070 kb on + strand, within RR42_RS30035at 2111.070 kb on + strand, within RR42_RS30035at 2111.071 kb on - strand, within RR42_RS30035at 2111.119 kb on + strand, within RR42_RS30035at 2111.119 kb on + strand, within RR42_RS30035at 2111.120 kb on - strand, within RR42_RS30035at 2111.120 kb on - strand, within RR42_RS30035at 2111.385 kb on - strandat 2111.385 kb on - strandat 2111.385 kb on - strandat 2111.385 kb on - strandat 2111.385 kb on - strandat 2111.385 kb on - strandat 2111.414 kb on + strandat 2111.414 kb on + strandat 2111.414 kb on + strandat 2111.415 kb on - strandat 2111.417 kb on - strandat 2111.417 kb on - strandat 2111.708 kb on + strand, within RR42_RS30040at 2111.981 kb on - strand, within RR42_RS30040at 2111.981 kb on - strand, within RR42_RS30040at 2111.981 kb on - strand, within RR42_RS30040at 2112.299 kb on - strand, within RR42_RS30040at 2112.299 kb on - strand, within RR42_RS30040at 2112.357 kb on - strand, within RR42_RS30040at 2112.366 kb on - strand, within RR42_RS30040at 2112.394 kb on + strand, within RR42_RS30040at 2112.394 kb on + strand, within RR42_RS30040at 2112.394 kb on + strand, within RR42_RS30040at 2112.394 kb on + strand, within RR42_RS30040at 2112.395 kb on - strand, within RR42_RS30040at 2112.395 kb on - strand, within RR42_RS30040at 2112.395 kb on - strand, within RR42_RS30040at 2112.395 kb on - strand, within RR42_RS30040at 2112.413 kb on + strand, within RR42_RS30040at 2112.414 kb on - strand, within RR42_RS30040at 2112.426 kb on + strand, within RR42_RS30040at 2112.515 kb on + strand, within RR42_RS30040at 2112.515 kb on + strand, within RR42_RS30040at 2112.515 kb on + strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.516 kb on - strand, within RR42_RS30040at 2112.597 kb on + strand, within RR42_RS30040at 2112.617 kb on + strand, within RR42_RS30040at 2112.647 kb on + strand, within RR42_RS30040at 2112.648 kb on - strand, within RR42_RS30040at 2112.648 kb on - strand, within RR42_RS30040at 2112.648 kb on - strand, within RR42_RS30040at 2112.741 kb on - strand, within RR42_RS30040at 2112.741 kb on - strand, within RR42_RS30040at 2113.242 kb on - strandat 2113.510 kb on - strand, within RR42_RS30045at 2113.620 kb on + strand, within RR42_RS30045at 2113.620 kb on + strand, within RR42_RS30045at 2113.821 kb on - strand, within RR42_RS30045at 2113.876 kb on - strand, within RR42_RS30045at 2113.876 kb on - strand, within RR42_RS30045at 2114.070 kb on + strand, within RR42_RS30045at 2114.097 kb on - strand, within RR42_RS30045at 2114.097 kb on - strand, within RR42_RS30045

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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2,110,603 + RR42_RS30035 0.37 -0.1
2,110,603 + RR42_RS30035 0.37 +0.4
2,110,604 - RR42_RS30035 0.38 +0.1
2,110,657 + RR42_RS30035 0.43 -1.8
2,110,657 + RR42_RS30035 0.43 -1.7
2,110,658 - RR42_RS30035 0.43 +0.4
2,110,931 + RR42_RS30035 0.69 -0.7
2,110,932 - RR42_RS30035 0.69 +0.7
2,111,017 + RR42_RS30035 0.77 +0.9
2,111,018 - RR42_RS30035 0.77 -1.2
2,111,070 + RR42_RS30035 0.82 -0.8
2,111,070 + RR42_RS30035 0.82 +1.3
2,111,071 - RR42_RS30035 0.82 +0.3
2,111,119 + RR42_RS30035 0.87 +0.6
2,111,119 + RR42_RS30035 0.87 +0.5
2,111,120 - RR42_RS30035 0.87 +0.6
2,111,120 - RR42_RS30035 0.87 +2.2
2,111,385 - +0.4
2,111,385 - -0.8
2,111,385 - +0.1
2,111,385 - -1.0
2,111,385 - -3.6
2,111,385 - +3.8
2,111,414 + -0.2
2,111,414 + -3.3
2,111,414 + +0.5
2,111,415 - +0.1
2,111,417 - +0.4
2,111,417 - -0.1
2,111,708 + RR42_RS30040 0.23 -2.3
2,111,981 - RR42_RS30040 0.37 +1.6
2,111,981 - RR42_RS30040 0.37 -0.6
2,111,981 - RR42_RS30040 0.37 +1.6
2,112,299 - RR42_RS30040 0.52 -0.0
2,112,299 - RR42_RS30040 0.52 +1.1
2,112,357 - RR42_RS30040 0.55 -0.5
2,112,366 - RR42_RS30040 0.56 +0.4
2,112,394 + RR42_RS30040 0.57 -0.0
2,112,394 + RR42_RS30040 0.57 +0.3
2,112,394 + RR42_RS30040 0.57 +0.0
2,112,394 + RR42_RS30040 0.57 -0.6
2,112,395 - RR42_RS30040 0.57 +0.7
2,112,395 - RR42_RS30040 0.57 -0.8
2,112,395 - RR42_RS30040 0.57 -0.8
2,112,395 - RR42_RS30040 0.57 +1.2
2,112,413 + RR42_RS30040 0.58 +0.6
2,112,414 - RR42_RS30040 0.58 +0.1
2,112,426 + RR42_RS30040 0.59 +0.9
2,112,515 + RR42_RS30040 0.63 -1.4
2,112,515 + RR42_RS30040 0.63 -1.2
2,112,515 + RR42_RS30040 0.63 -1.0
2,112,516 - RR42_RS30040 0.63 +0.1
2,112,516 - RR42_RS30040 0.63 +0.6
2,112,516 - RR42_RS30040 0.63 -0.2
2,112,516 - RR42_RS30040 0.63 -0.6
2,112,516 - RR42_RS30040 0.63 -4.5
2,112,516 - RR42_RS30040 0.63 -3.3
2,112,516 - RR42_RS30040 0.63 +0.4
2,112,516 - RR42_RS30040 0.63 -0.2
2,112,597 + RR42_RS30040 0.67 -2.6
2,112,617 + RR42_RS30040 0.68 -3.2
2,112,647 + RR42_RS30040 0.69 -0.6
2,112,648 - RR42_RS30040 0.70 -0.2
2,112,648 - RR42_RS30040 0.70 -0.6
2,112,648 - RR42_RS30040 0.70 +0.9
2,112,741 - RR42_RS30040 0.74 -0.5
2,112,741 - RR42_RS30040 0.74 +0.3
2,113,242 - -1.5
2,113,510 - RR42_RS30045 0.17 -0.3
2,113,620 + RR42_RS30045 0.24 -1.7
2,113,620 + RR42_RS30045 0.24 -0.1
2,113,821 - RR42_RS30045 0.37 -1.8
2,113,876 - RR42_RS30045 0.41 +0.5
2,113,876 - RR42_RS30045 0.41 -2.0
2,114,070 + RR42_RS30045 0.53 +0.5
2,114,097 - RR42_RS30045 0.55 -0.3
2,114,097 - RR42_RS30045 0.55 +1.0

Or see this region's nucleotide sequence