Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29915

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,077,460	+		RR42_RS29910	0.41	-3.7
2,077,461	-		RR42_RS29910	0.41	-2.8
2,077,467	+		RR42_RS29910	0.42	-1.3
2,077,468	-		RR42_RS29910	0.42	-1.1
2,077,492	+		RR42_RS29910	0.44	-3.3
2,077,492	+		RR42_RS29910	0.44	-1.6
2,077,493	-		RR42_RS29910	0.44	-1.5
2,077,547	+		RR42_RS29910	0.50	-3.3
2,077,548	-		RR42_RS29910	0.50	-0.3
2,077,597	-		RR42_RS29910	0.55	-0.8
2,077,696	+		RR42_RS29910	0.64	-1.1
2,077,697	+		RR42_RS29910	0.64	-1.1
2,077,698	-		RR42_RS29910	0.65	-1.3
2,077,744	+		RR42_RS29910	0.69	-2.3
2,077,745	-		RR42_RS29910	0.69	-2.1
2,077,786	-		RR42_RS29910	0.73	-0.6
2,077,868	-		RR42_RS29910	0.81	-2.3
2,077,924	-		RR42_RS29910	0.87	-0.9
2,077,924	-		RR42_RS29910	0.87	-1.2
2,077,924	-		RR42_RS29910	0.87	-1.2
2,077,954	+		RR42_RS29910	0.90	-1.6
2,077,954	+		RR42_RS29910	0.90	-4.0
2,077,955	-		RR42_RS29910	0.90	-0.5
2,077,955	-		RR42_RS29910	0.90	-1.8
2,077,955	-		RR42_RS29910	0.90	-2.4
2,078,028	+				-2.3
2,078,028	+				+0.3
2,078,028	+				-0.3
2,078,042	-				-0.8
2,078,057	+				+0.1
2,078,057	+				+1.1
2,078,057	+				-0.3
2,078,057	+				-1.8
2,078,058	-				+0.9
2,078,058	-				+0.5
2,078,058	-				+0.2
2,078,058	-				-0.2
2,078,074	+				+0.5
2,078,074	+				-2.0
2,078,075	-				+2.6
2,078,112	+				+0.3
2,078,112	+				-1.2
2,078,112	+				-0.2
2,078,112	+				+0.5
2,078,112	+				-0.3
2,078,112	+				+1.2
2,078,113	-				+0.7
2,078,113	-				+0.1
2,078,113	-				-0.3
2,078,116	+				-1.5
2,078,116	+				+1.4
2,078,117	-				-3.3
2,078,117	-				-0.8
2,078,149	+				-0.8
2,078,149	+				+2.7
2,078,149	+				-3.4
2,078,149	+				+0.2
2,078,149	+				+0.7
2,078,149	+				-1.3
2,078,150	-				+0.5
2,078,150	-				-2.1
2,078,150	-				-1.1
2,078,163	-				-0.8
2,078,165	+				+0.5
2,078,166	-				-0.1
2,078,166	-				-2.6
2,078,221	+				+0.0
2,078,221	+				+0.1
2,078,229	-				-0.7
2,078,260	-				-0.2
2,078,260	-				-1.3
2,078,331	+				+0.2
2,078,331	+				-2.6
2,078,332	-				-0.8
2,078,332	-				-0.4
2,078,418	+				-0.4
2,078,527	-		RR42_RS29915	0.25	+0.9
2,078,558	-		RR42_RS29915	0.32	+1.9
2,078,558	-		RR42_RS29915	0.32	+0.7
2,078,558	-		RR42_RS29915	0.32	+0.5
2,078,664	+		RR42_RS29915	0.56	+1.3
2,078,748	+		RR42_RS29915	0.75	+1.1
2,078,749	-		RR42_RS29915	0.75	+0.2
2,078,757	+		RR42_RS29915	0.77	-1.8
2,078,758	-		RR42_RS29915	0.77	+1.4
2,078,801	+		RR42_RS29915	0.86	+0.2
2,078,801	+		RR42_RS29915	0.86	+0.7
2,078,802	-		RR42_RS29915	0.87	+0.9
2,078,802	-		RR42_RS29915	0.87	-0.3
2,078,802	-		RR42_RS29915	0.87	-0.4
2,078,802	-		RR42_RS29915	0.87	-1.7
2,078,802	-		RR42_RS29915	0.87	-1.0
2,078,823	-				-0.3
2,078,863	+				+2.7
2,078,863	+				+0.7
2,078,864	-				-0.7
2,078,873	-				+1.2
2,078,959	-				+1.0
2,079,034	+				-0.8
2,079,034	+				-0.3
2,079,035	-				+1.0
2,079,040	+				-1.8
2,079,040	+				-0.1
2,079,041	-				-1.4
2,079,041	-				-1.8
2,079,041	-				+0.1
2,079,133	-		RR42_RS29920	0.33	+2.3
2,079,204	+		RR42_RS29920	0.52	-0.1
2,079,212	+		RR42_RS29920	0.55	-0.2
2,079,212	+		RR42_RS29920	0.55	-2.3
2,079,213	-		RR42_RS29920	0.55	+1.8
2,079,213	-		RR42_RS29920	0.55	+0.3
2,079,213	-		RR42_RS29920	0.55	+0.7
2,079,344	+				+0.8
2,079,344	+				-0.1
2,079,345	-				+0.4
2,079,354	+				+1.0
2,079,354	+				-1.1
2,079,354	+				+0.2
2,079,354	+				+0.7
2,079,355	-				+1.4
2,079,355	-				+0.1
2,079,355	-				+0.3
2,079,382	+				+1.7
2,079,382	+				+0.2
2,079,383	-				-0.5
2,079,383	-				-0.6
2,079,383	-				+2.0
2,079,414	+				-0.4
2,079,435	+				-1.5
2,079,436	-				-1.1
2,079,478	-				+0.1
2,079,478	-				+1.7
2,079,533	+				+0.1
2,079,633	+				-0.3
2,079,641	+				-0.3
2,079,641	+				+0.6
2,079,641	+				+1.1
2,079,642	-				-0.8
2,079,705	+				+0.5
2,079,706	-				-0.3
2,079,706	-				+0.4
2,079,745	+		RR42_RS29925	0.11	+0.5
2,079,783	+		RR42_RS29925	0.14	+0.6
2,079,783	+		RR42_RS29925	0.14	+3.6
2,079,784	-		RR42_RS29925	0.14	+0.2
2,079,830	+		RR42_RS29925	0.18	-0.7
2,079,831	-		RR42_RS29925	0.18	-3.3
2,079,846	+		RR42_RS29925	0.19	+0.5
2,079,850	-		RR42_RS29925	0.20	+0.0
2,079,850	-		RR42_RS29925	0.20	+0.3