Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29865

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,065,189	+		RR42_RS29860	0.57	+2.7
2,065,190	-		RR42_RS29860	0.57	+0.7
2,065,190	-		RR42_RS29860	0.57	+0.4
2,065,190	-		RR42_RS29860	0.57	+0.6
2,065,214	+		RR42_RS29860	0.59	+0.3
2,065,214	+		RR42_RS29860	0.59	-1.8
2,065,214	+		RR42_RS29860	0.59	+0.0
2,065,215	-		RR42_RS29860	0.59	-0.7
2,065,215	-		RR42_RS29860	0.59	-1.1
2,065,215	-		RR42_RS29860	0.59	+0.5
2,065,215	-		RR42_RS29860	0.59	+1.1
2,065,255	+		RR42_RS29860	0.62	-1.0
2,065,255	+		RR42_RS29860	0.62	-3.2
2,065,255	+		RR42_RS29860	0.62	+0.7
2,065,260	+		RR42_RS29860	0.62	+1.1
2,065,261	-		RR42_RS29860	0.62	+0.7
2,065,261	-		RR42_RS29860	0.62	+0.1
2,065,279	-		RR42_RS29860	0.64	-0.4
2,065,316	+		RR42_RS29860	0.66	+1.2
2,065,316	+		RR42_RS29860	0.66	+0.7
2,065,316	+		RR42_RS29860	0.66	-0.8
2,065,316	+		RR42_RS29860	0.66	-0.3
2,065,317	-		RR42_RS29860	0.66	+0.3
2,065,317	-		RR42_RS29860	0.66	-1.2
2,065,471	-		RR42_RS29860	0.77	+2.5
2,065,472	+		RR42_RS29860	0.77	+0.1
2,065,472	+		RR42_RS29860	0.77	+0.9
2,065,473	-		RR42_RS29860	0.77	+2.4
2,065,473	-		RR42_RS29860	0.77	+1.6
2,065,536	-		RR42_RS29860	0.82	-1.6
2,065,585	+		RR42_RS29860	0.85	+2.0
2,065,585	+		RR42_RS29860	0.85	+0.2
2,065,586	-		RR42_RS29860	0.85	+2.1
2,065,600	+		RR42_RS29860	0.86	-0.8
2,065,600	+		RR42_RS29860	0.86	-0.6
2,065,601	-		RR42_RS29860	0.86	+2.0
2,065,641	+		RR42_RS29860	0.89	-0.1
2,065,642	-		RR42_RS29860	0.89	-0.5
2,065,716	+				+1.4
2,065,716	+				+0.2
2,065,716	+				-0.0
2,065,722	+				+0.5
2,065,795	+				+0.3
2,065,795	+				+0.3
2,065,795	+				+0.2
2,065,795	+				-0.3
2,065,795	+				+0.7
2,065,819	+				-2.4
2,065,819	+				+0.7
2,065,819	+				+2.6
2,065,842	+				-2.4
2,065,842	+				-0.4
2,065,843	-				-0.3
2,065,843	-				+0.8
2,065,879	+				-1.1
2,065,880	-				-1.4
2,065,901	-				+0.7
2,065,902	+				+0.1
2,065,903	-				-0.2
2,065,903	-				-0.2
2,066,009	+				+1.1
2,066,009	+				+0.4
2,066,010	-				+1.5
2,066,053	+				+0.9
2,066,053	+				+0.0
2,066,056	+				+0.1
2,066,056	+				-1.1
2,066,056	+				-1.8
2,066,093	+				-2.1
2,066,093	+				-3.0
2,066,219	+		RR42_RS29865	0.31	-0.8
2,066,220	-		RR42_RS29865	0.31	-0.8
2,066,309	+		RR42_RS29865	0.66	-1.8
2,066,309	+		RR42_RS29865	0.66	-2.8
2,066,378	+				+0.4
2,066,379	-				+0.2
2,066,379	-				-3.7
2,066,379	-				-2.7
2,066,436	+				-2.7
2,066,436	+				-4.1
2,066,462	+				-2.6
2,066,489	+				-2.1
2,066,490	-				-2.0
2,066,537	-				+1.0
2,066,539	-				+0.5
2,066,570	-				-0.2
2,066,665	+				-0.5
2,066,809	+				+1.0
2,066,810	-				-1.3
2,066,810	-				-0.8
2,066,836	+				-0.9
2,066,836	+				-0.2
2,066,836	+				-1.8
2,066,852	+				-0.3
2,066,852	+				-1.8
2,066,853	-				+0.6
2,066,853	-				+0.6
2,066,853	-				+0.3
2,066,853	-				+0.2
2,066,853	-				+0.2
2,066,857	+				-0.3
2,066,858	-				-0.2
2,066,858	-				-1.1
2,066,902	-		RR42_RS29870	0.18	+0.6
2,066,902	-		RR42_RS29870	0.18	+2.3
2,066,902	-		RR42_RS29870	0.18	+1.5
2,066,910	+		RR42_RS29870	0.19	+0.0
2,067,050	+		RR42_RS29870	0.46	-0.5
2,067,051	-		RR42_RS29870	0.46	-0.6
2,067,051	-		RR42_RS29870	0.46	+0.5
2,067,051	-		RR42_RS29870	0.46	-0.4
2,067,111	+		RR42_RS29870	0.58	+0.9
2,067,112	-		RR42_RS29870	0.58	+0.6
2,067,276	+		RR42_RS29870	0.89	-0.1
2,067,277	-		RR42_RS29870	0.89	+0.2
2,067,280	+				+0.2
2,067,280	+				-1.8
2,067,280	+				+0.6
2,067,281	-				+1.0
2,067,281	-				-1.6
2,067,281	-				+0.7
2,067,281	-				-1.3
2,067,281	-				-0.6
2,067,323	-				+0.3
2,067,346	+				-0.4
2,067,347	-				-1.4