Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29840 and RR42_RS29845 are separated by 23 nucleotides RR42_RS29845 and RR42_RS29850 overlap by 1 nucleotides RR42_RS29850 and RR42_RS29855 are separated by 121 nucleotides
RR42_RS29840: RR42_RS29840 - hypothetical protein, at 2,060,679 to 2,061,890
_RS29840
RR42_RS29845: RR42_RS29845 - ferredoxin, at 2,061,914 to 2,062,111
_RS29845
RR42_RS29850: RR42_RS29850 - hypothetical protein, at 2,062,111 to 2,063,217
_RS29850
RR42_RS29855: RR42_RS29855 - hypothetical protein, at 2,063,339 to 2,064,307
_RS29855
Position (kb)
2062
2063
2064 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2061.114 kb on - strand, within RR42_RS29840 at 2061.114 kb on - strand, within RR42_RS29840 at 2061.114 kb on - strand, within RR42_RS29840 at 2061.123 kb on - strand, within RR42_RS29840 at 2061.163 kb on - strand, within RR42_RS29840 at 2061.212 kb on + strand, within RR42_RS29840 at 2061.213 kb on - strand, within RR42_RS29840 at 2061.264 kb on + strand, within RR42_RS29840 at 2061.264 kb on + strand, within RR42_RS29840 at 2061.265 kb on - strand, within RR42_RS29840 at 2061.265 kb on - strand, within RR42_RS29840 at 2061.265 kb on - strand, within RR42_RS29840 at 2061.265 kb on - strand, within RR42_RS29840 at 2061.311 kb on + strand, within RR42_RS29840 at 2061.311 kb on + strand, within RR42_RS29840 at 2061.312 kb on - strand, within RR42_RS29840 at 2061.340 kb on + strand, within RR42_RS29840 at 2061.341 kb on - strand, within RR42_RS29840 at 2061.341 kb on - strand, within RR42_RS29840 at 2061.341 kb on - strand, within RR42_RS29840 at 2061.422 kb on + strand, within RR42_RS29840 at 2061.422 kb on + strand, within RR42_RS29840 at 2061.528 kb on + strand, within RR42_RS29840 at 2061.619 kb on + strand, within RR42_RS29840 at 2061.619 kb on + strand, within RR42_RS29840 at 2061.620 kb on - strand, within RR42_RS29840 at 2061.620 kb on - strand, within RR42_RS29840 at 2061.620 kb on - strand, within RR42_RS29840 at 2061.858 kb on + strand at 2061.858 kb on + strand at 2061.858 kb on + strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.859 kb on - strand at 2061.888 kb on + strand at 2061.889 kb on - strand at 2062.287 kb on - strand, within RR42_RS29850 at 2062.339 kb on + strand, within RR42_RS29850 at 2062.416 kb on + strand, within RR42_RS29850 at 2062.418 kb on - strand, within RR42_RS29850 at 2062.489 kb on + strand, within RR42_RS29850 at 2062.505 kb on + strand, within RR42_RS29850 at 2062.506 kb on - strand, within RR42_RS29850 at 2062.556 kb on + strand, within RR42_RS29850 at 2062.556 kb on + strand, within RR42_RS29850 at 2062.556 kb on + strand, within RR42_RS29850 at 2062.556 kb on + strand, within RR42_RS29850 at 2062.556 kb on + strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.557 kb on - strand, within RR42_RS29850 at 2062.559 kb on + strand, within RR42_RS29850 at 2062.560 kb on - strand, within RR42_RS29850 at 2062.814 kb on + strand, within RR42_RS29850 at 2062.814 kb on + strand, within RR42_RS29850 at 2062.815 kb on - strand, within RR42_RS29850 at 2062.815 kb on - strand, within RR42_RS29850 at 2062.866 kb on - strand, within RR42_RS29850 at 2062.883 kb on + strand, within RR42_RS29850 at 2062.897 kb on + strand, within RR42_RS29850 at 2062.898 kb on - strand, within RR42_RS29850 at 2062.898 kb on - strand, within RR42_RS29850 at 2062.898 kb on - strand, within RR42_RS29850 at 2062.919 kb on + strand, within RR42_RS29850 at 2062.919 kb on + strand, within RR42_RS29850 at 2062.919 kb on + strand, within RR42_RS29850 at 2062.919 kb on + strand, within RR42_RS29850 at 2062.919 kb on + strand, within RR42_RS29850 at 2062.920 kb on - strand, within RR42_RS29850 at 2062.920 kb on - strand, within RR42_RS29850 at 2062.920 kb on - strand, within RR42_RS29850 at 2062.920 kb on - strand, within RR42_RS29850 at 2062.920 kb on - strand, within RR42_RS29850 at 2062.921 kb on + strand, within RR42_RS29850 at 2062.921 kb on + strand, within RR42_RS29850 at 2063.051 kb on - strand, within RR42_RS29850 at 2063.051 kb on - strand, within RR42_RS29850 at 2063.083 kb on + strand, within RR42_RS29850 at 2063.104 kb on + strand, within RR42_RS29850 at 2063.104 kb on + strand, within RR42_RS29850 at 2063.125 kb on + strand at 2063.125 kb on + strand at 2063.126 kb on - strand at 2063.126 kb on - strand at 2063.126 kb on - strand at 2063.126 kb on - strand at 2063.127 kb on - strand at 2063.186 kb on - strand at 2063.214 kb on + strand at 2063.214 kb on + strand at 2063.214 kb on + strand at 2063.214 kb on + strand at 2063.215 kb on - strand at 2063.215 kb on - strand at 2063.306 kb on - strand at 2063.306 kb on - strand at 2063.313 kb on + strand at 2063.314 kb on - strand at 2063.314 kb on - strand at 2063.321 kb on - strand at 2063.324 kb on - strand at 2063.376 kb on + strand at 2063.376 kb on + strand at 2063.377 kb on - strand at 2063.377 kb on - strand at 2063.377 kb on - strand at 2063.408 kb on + strand at 2063.408 kb on + strand at 2063.408 kb on + strand at 2063.478 kb on + strand, within RR42_RS29855 at 2063.479 kb on - strand, within RR42_RS29855 at 2063.479 kb on - strand, within RR42_RS29855 at 2063.479 kb on - strand, within RR42_RS29855 at 2063.750 kb on + strand, within RR42_RS29855 at 2063.750 kb on + strand, within RR42_RS29855 at 2063.751 kb on - strand, within RR42_RS29855 at 2063.751 kb on - strand, within RR42_RS29855 at 2063.751 kb on - strand, within RR42_RS29855 at 2063.751 kb on - strand, within RR42_RS29855 at 2063.773 kb on + strand, within RR42_RS29855 at 2063.773 kb on + strand, within RR42_RS29855 at 2063.807 kb on + strand, within RR42_RS29855 at 2063.807 kb on + strand, within RR42_RS29855 at 2063.808 kb on - strand, within RR42_RS29855 at 2063.868 kb on + strand, within RR42_RS29855 at 2063.869 kb on - strand, within RR42_RS29855 at 2063.869 kb on - strand, within RR42_RS29855 at 2063.954 kb on - strand, within RR42_RS29855 at 2063.978 kb on - strand, within RR42_RS29855 at 2064.029 kb on - strand, within RR42_RS29855 at 2064.029 kb on - strand, within RR42_RS29855 at 2064.046 kb on + strand, within RR42_RS29855 at 2064.046 kb on + strand, within RR42_RS29855 at 2064.047 kb on - strand, within RR42_RS29855 at 2064.047 kb on - strand, within RR42_RS29855 at 2064.079 kb on + strand, within RR42_RS29855 at 2064.079 kb on + strand, within RR42_RS29855 at 2064.080 kb on - strand, within RR42_RS29855 at 2064.098 kb on + strand, within RR42_RS29855 at 2064.099 kb on - strand, within RR42_RS29855 at 2064.099 kb on - strand, within RR42_RS29855
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 2,061,114 - RR42_RS29840 0.36 +0.2 2,061,114 - RR42_RS29840 0.36 -2.4 2,061,114 - RR42_RS29840 0.36 -1.1 2,061,123 - RR42_RS29840 0.37 +0.4 2,061,163 - RR42_RS29840 0.40 -0.8 2,061,212 + RR42_RS29840 0.44 +0.0 2,061,213 - RR42_RS29840 0.44 +1.6 2,061,264 + RR42_RS29840 0.48 +0.4 2,061,264 + RR42_RS29840 0.48 +0.2 2,061,265 - RR42_RS29840 0.48 -0.5 2,061,265 - RR42_RS29840 0.48 -1.4 2,061,265 - RR42_RS29840 0.48 -0.2 2,061,265 - RR42_RS29840 0.48 +0.7 2,061,311 + RR42_RS29840 0.52 -1.8 2,061,311 + RR42_RS29840 0.52 -2.8 2,061,312 - RR42_RS29840 0.52 +1.2 2,061,340 + RR42_RS29840 0.55 -0.5 2,061,341 - RR42_RS29840 0.55 +0.1 2,061,341 - RR42_RS29840 0.55 -0.5 2,061,341 - RR42_RS29840 0.55 -0.8 2,061,422 + RR42_RS29840 0.61 +2.3 2,061,422 + RR42_RS29840 0.61 -0.2 2,061,528 + RR42_RS29840 0.70 -1.3 2,061,619 + RR42_RS29840 0.78 -3.0 2,061,619 + RR42_RS29840 0.78 +0.1 2,061,620 - RR42_RS29840 0.78 -2.0 2,061,620 - RR42_RS29840 0.78 -1.4 2,061,620 - RR42_RS29840 0.78 +1.7 2,061,858 + +0.6 2,061,858 + -1.0 2,061,858 + +1.6 2,061,859 - +0.3 2,061,859 - -0.1 2,061,859 - +1.7 2,061,859 - -1.0 2,061,859 - -4.3 2,061,859 - -0.4 2,061,859 - +0.6 2,061,859 - +2.1 2,061,859 - +1.0 2,061,859 - -0.3 2,061,859 - +0.7 2,061,888 + +0.1 2,061,889 - +0.9 2,062,287 - RR42_RS29850 0.16 +1.1 2,062,339 + RR42_RS29850 0.21 -0.6 2,062,416 + RR42_RS29850 0.28 +0.8 2,062,418 - RR42_RS29850 0.28 -0.6 2,062,489 + RR42_RS29850 0.34 -0.6 2,062,505 + RR42_RS29850 0.36 -0.7 2,062,506 - RR42_RS29850 0.36 -0.4 2,062,556 + RR42_RS29850 0.40 -0.8 2,062,556 + RR42_RS29850 0.40 -0.7 2,062,556 + RR42_RS29850 0.40 -0.8 2,062,556 + RR42_RS29850 0.40 +0.3 2,062,556 + RR42_RS29850 0.40 -0.8 2,062,557 - RR42_RS29850 0.40 +0.8 2,062,557 - RR42_RS29850 0.40 -2.3 2,062,557 - RR42_RS29850 0.40 +0.2 2,062,557 - RR42_RS29850 0.40 -0.2 2,062,557 - RR42_RS29850 0.40 +0.1 2,062,557 - RR42_RS29850 0.40 +0.4 2,062,559 + RR42_RS29850 0.40 -0.3 2,062,560 - RR42_RS29850 0.41 +0.3 2,062,814 + RR42_RS29850 0.64 +1.3 2,062,814 + RR42_RS29850 0.64 +1.0 2,062,815 - RR42_RS29850 0.64 +0.3 2,062,815 - RR42_RS29850 0.64 -0.3 2,062,866 - RR42_RS29850 0.68 +1.5 2,062,883 + RR42_RS29850 0.70 +0.0 2,062,897 + RR42_RS29850 0.71 -0.4 2,062,898 - RR42_RS29850 0.71 -0.1 2,062,898 - RR42_RS29850 0.71 -0.1 2,062,898 - RR42_RS29850 0.71 -0.5 2,062,919 + RR42_RS29850 0.73 -0.3 2,062,919 + RR42_RS29850 0.73 -0.6 2,062,919 + RR42_RS29850 0.73 -0.3 2,062,919 + RR42_RS29850 0.73 +0.7 2,062,919 + RR42_RS29850 0.73 -3.3 2,062,920 - RR42_RS29850 0.73 -0.3 2,062,920 - RR42_RS29850 0.73 -0.3 2,062,920 - RR42_RS29850 0.73 -3.3 2,062,920 - RR42_RS29850 0.73 +2.6 2,062,920 - RR42_RS29850 0.73 +0.4 2,062,921 + RR42_RS29850 0.73 -0.1 2,062,921 + RR42_RS29850 0.73 -2.1 2,063,051 - RR42_RS29850 0.85 -0.6 2,063,051 - RR42_RS29850 0.85 +2.6 2,063,083 + RR42_RS29850 0.88 -3.6 2,063,104 + RR42_RS29850 0.90 +1.1 2,063,104 + RR42_RS29850 0.90 +0.3 2,063,125 + -1.3 2,063,125 + +1.5 2,063,126 - -0.4 2,063,126 - +0.3 2,063,126 - +0.4 2,063,126 - +1.9 2,063,127 - +0.1 2,063,186 - +0.3 2,063,214 + -3.1 2,063,214 + -0.3 2,063,214 + -0.4 2,063,214 + -2.9 2,063,215 - -0.4 2,063,215 - +0.9 2,063,306 - +0.3 2,063,306 - -0.8 2,063,313 + -0.0 2,063,314 - -1.8 2,063,314 - -0.1 2,063,321 - +2.4 2,063,324 - +0.4 2,063,376 + -1.6 2,063,376 + -1.8 2,063,377 - +0.5 2,063,377 - +0.2 2,063,377 - +1.1 2,063,408 + -2.6 2,063,408 + +0.5 2,063,408 + +1.6 2,063,478 + RR42_RS29855 0.14 +1.4 2,063,479 - RR42_RS29855 0.14 -1.0 2,063,479 - RR42_RS29855 0.14 +0.3 2,063,479 - RR42_RS29855 0.14 -2.6 2,063,750 + RR42_RS29855 0.42 -0.7 2,063,750 + RR42_RS29855 0.42 -1.3 2,063,751 - RR42_RS29855 0.43 +0.2 2,063,751 - RR42_RS29855 0.43 -1.4 2,063,751 - RR42_RS29855 0.43 -1.3 2,063,751 - RR42_RS29855 0.43 -0.2 2,063,773 + RR42_RS29855 0.45 +0.7 2,063,773 + RR42_RS29855 0.45 -0.3 2,063,807 + RR42_RS29855 0.48 -1.8 2,063,807 + RR42_RS29855 0.48 -0.1 2,063,808 - RR42_RS29855 0.48 -1.9 2,063,868 + RR42_RS29855 0.55 -0.8 2,063,869 - RR42_RS29855 0.55 +0.5 2,063,869 - RR42_RS29855 0.55 -0.3 2,063,954 - RR42_RS29855 0.63 -0.6 2,063,978 - RR42_RS29855 0.66 -0.3 2,064,029 - RR42_RS29855 0.71 +0.7 2,064,029 - RR42_RS29855 0.71 -0.9 2,064,046 + RR42_RS29855 0.73 +0.5 2,064,046 + RR42_RS29855 0.73 +0.5 2,064,047 - RR42_RS29855 0.73 +0.1 2,064,047 - RR42_RS29855 0.73 -2.7 2,064,079 + RR42_RS29855 0.76 -1.1 2,064,079 + RR42_RS29855 0.76 +0.6 2,064,080 - RR42_RS29855 0.76 +0.4 2,064,098 + RR42_RS29855 0.78 +0.2 2,064,099 - RR42_RS29855 0.78 +0.6 2,064,099 - RR42_RS29855 0.78 +0.2
Or see this region's nucleotide sequence