Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29495

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,973,296	+		RR42_RS29485	0.82	-2.1
1,973,296	+		RR42_RS29485	0.82	-1.3
1,973,296	+		RR42_RS29485	0.82	+0.6
1,973,296	+		RR42_RS29485	0.82	-2.1
1,973,297	-		RR42_RS29485	0.82	-0.9
1,973,297	-		RR42_RS29485	0.82	-1.3
1,973,297	-		RR42_RS29485	0.82	+0.7
1,973,297	-		RR42_RS29485	0.82	-2.0
1,973,297	-		RR42_RS29485	0.82	+0.2
1,973,297	-		RR42_RS29485	0.82	+0.7
1,973,297	-		RR42_RS29485	0.82	-1.6
1,973,297	-		RR42_RS29485	0.82	-1.1
1,973,297	-		RR42_RS29485	0.82	+2.5
1,973,515	-				+0.8
1,973,664	+				-1.3
1,973,664	+				+2.5
1,973,665	-				-1.1
1,973,672	+				-1.9
1,973,672	+				+0.2
1,973,672	+				-0.3
1,973,673	-				-0.1
1,973,763	-				-0.5
1,973,763	-				+0.3
1,973,805	+				-1.1
1,973,984	-		RR42_RS29490	0.50	-1.0
1,974,068	-		RR42_RS29490	0.83	-2.7
1,974,107	+				-1.9
1,974,108	-				-0.0
1,974,146	+				-0.3
1,974,168	-				-1.3
1,974,212	-				-2.2
1,974,279	+		RR42_RS29495	0.12	-0.7
1,974,279	+		RR42_RS29495	0.12	-1.3
1,974,280	-		RR42_RS29495	0.13	-2.1
1,974,313	+		RR42_RS29495	0.15	-0.7
1,974,723	+		RR42_RS29495	0.46	-1.4
1,974,724	-		RR42_RS29495	0.46	-1.5
1,974,724	-		RR42_RS29495	0.46	-3.4
1,974,757	-		RR42_RS29495	0.48	-0.5
1,974,769	+		RR42_RS29495	0.49	-0.5
1,974,770	-		RR42_RS29495	0.49	-1.6
1,974,790	-		RR42_RS29495	0.51	+0.3
1,974,931	+		RR42_RS29495	0.61	+0.7
1,974,932	-		RR42_RS29495	0.61	-2.2
1,974,932	-		RR42_RS29495	0.61	+0.0
1,975,123	+		RR42_RS29495	0.75	-3.1
1,975,124	-		RR42_RS29495	0.75	+0.3
1,975,124	-		RR42_RS29495	0.75	+0.7
1,975,124	-		RR42_RS29495	0.75	+1.2
1,975,226	-		RR42_RS29495	0.83	-0.4
1,975,226	-		RR42_RS29495	0.83	+0.1
1,975,451	-				+0.7
1,975,451	-				+0.3
1,975,458	+				+0.1
1,975,458	+				+1.1
1,975,459	-				-0.8
1,975,459	-				-1.4
1,975,459	-				+1.6
1,975,523	+				+0.2
1,975,523	+				+0.3
1,975,524	-				-0.7
1,975,639	+				+0.2
1,975,639	+				+0.9
1,975,640	-				+0.7
1,975,708	+				+0.1
1,975,708	+				+0.1
1,975,708	+				-0.9
1,975,708	+				+0.4
1,975,708	+				+0.7
1,975,709	-				+0.3
1,975,709	-				+0.4
1,975,753	+		RR42_RS29500	0.12	-2.6
1,975,754	-		RR42_RS29500	0.13	+0.4
1,975,831	+		RR42_RS29500	0.19	+0.4
1,975,831	+		RR42_RS29500	0.19	-2.1
1,975,831	+		RR42_RS29500	0.19	-1.3
1,975,832	-		RR42_RS29500	0.19	-0.7
1,975,832	-		RR42_RS29500	0.19	+0.3
1,975,832	-		RR42_RS29500	0.19	-3.1
1,976,071	+		RR42_RS29500	0.40	-1.3
1,976,071	+		RR42_RS29500	0.40	-4.0
1,976,071	+		RR42_RS29500	0.40	+0.5
1,976,071	+		RR42_RS29500	0.40	-2.1
1,976,072	-		RR42_RS29500	0.40	+1.0
1,976,072	-		RR42_RS29500	0.40	+0.0
1,976,380	+		RR42_RS29500	0.66	-0.1
1,976,380	+		RR42_RS29500	0.66	-1.1
1,976,381	-		RR42_RS29500	0.66	-3.2
1,976,381	-		RR42_RS29500	0.66	-0.7
1,976,386	+		RR42_RS29500	0.66	+1.8
1,976,386	+		RR42_RS29500	0.66	+0.6
1,976,387	-		RR42_RS29500	0.66	-0.3
1,976,387	-		RR42_RS29500	0.66	-1.4