Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29420

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,953,721	+		RR42_RS29415	0.17	-0.4
1,953,722	-		RR42_RS29415	0.17	-1.1
1,953,877	+		RR42_RS29415	0.31	+1.3
1,953,877	+		RR42_RS29415	0.31	-0.0
1,953,878	-		RR42_RS29415	0.31	+0.2
1,953,878	-		RR42_RS29415	0.31	+1.5
1,953,964	+		RR42_RS29415	0.38	+0.8
1,953,964	+		RR42_RS29415	0.38	+0.1
1,953,965	-		RR42_RS29415	0.38	+1.5
1,953,965	-		RR42_RS29415	0.38	-0.8
1,953,965	-		RR42_RS29415	0.38	+0.3
1,953,965	-		RR42_RS29415	0.38	-0.2
1,953,965	-		RR42_RS29415	0.38	-0.4
1,953,965	-		RR42_RS29415	0.38	-0.1
1,954,036	-		RR42_RS29415	0.44	-0.8
1,954,036	-		RR42_RS29415	0.44	+0.9
1,954,159	+		RR42_RS29415	0.55	-0.0
1,954,160	-		RR42_RS29415	0.55	-0.7
1,954,218	+		RR42_RS29415	0.60	+0.5
1,954,218	+		RR42_RS29415	0.60	+0.5
1,954,219	-		RR42_RS29415	0.60	+1.5
1,954,222	+		RR42_RS29415	0.61	-0.8
1,954,222	+		RR42_RS29415	0.61	-0.3
1,954,244	+		RR42_RS29415	0.62	-1.7
1,954,245	-		RR42_RS29415	0.63	-1.5
1,954,245	-		RR42_RS29415	0.63	+0.1
1,954,312	+		RR42_RS29415	0.68	+0.8
1,954,312	+		RR42_RS29415	0.68	-1.0
1,954,313	-		RR42_RS29415	0.68	-0.2
1,954,369	+		RR42_RS29415	0.73	+0.4
1,954,369	+		RR42_RS29415	0.73	-0.6
1,954,369	+		RR42_RS29415	0.73	+0.9
1,954,370	-		RR42_RS29415	0.73	-1.8
1,954,370	-		RR42_RS29415	0.73	+0.1
1,954,549	+		RR42_RS29415	0.89	-0.1
1,954,550	-		RR42_RS29415	0.89	+3.0
1,954,550	-		RR42_RS29415	0.89	-0.9
1,954,879	+				-1.4
1,954,879	+				-0.4
1,954,879	+				-0.2
1,954,879	+				-4.3
1,954,879	+				-0.6
1,954,880	-				-0.5
1,954,880	-				+0.8
1,954,880	-				-0.7
1,954,880	-				-0.5
1,954,880	-				-0.0
1,954,881	+				-2.2
1,954,882	-				-1.4
1,954,909	+				+0.5
1,954,910	-				-1.1
1,955,033	+		RR42_RS29420	0.16	-2.3
1,955,033	+		RR42_RS29420	0.16	-0.9
1,955,033	+		RR42_RS29420	0.16	+0.5
1,955,034	-		RR42_RS29420	0.16	+0.1
1,955,131	+		RR42_RS29420	0.21	-0.4
1,955,581	+		RR42_RS29420	0.43	-3.1
1,955,581	+		RR42_RS29420	0.43	-1.7
1,955,581	+		RR42_RS29420	0.43	-1.4
1,955,581	+		RR42_RS29420	0.43	-3.0
1,955,582	-		RR42_RS29420	0.43	-0.5
1,955,582	-		RR42_RS29420	0.43	-0.9
1,955,584	+		RR42_RS29420	0.43	+0.2
1,955,584	+		RR42_RS29420	0.43	-0.3
1,955,584	+		RR42_RS29420	0.43	-1.0
1,955,585	-		RR42_RS29420	0.43	+0.2
1,955,585	-		RR42_RS29420	0.43	-2.1
1,955,585	-		RR42_RS29420	0.43	-1.9
1,955,585	-		RR42_RS29420	0.43	-0.3
1,955,585	-		RR42_RS29420	0.43	-0.9
1,955,775	+		RR42_RS29420	0.53	+0.6
1,955,776	-		RR42_RS29420	0.53	-3.0
1,955,869	+		RR42_RS29420	0.58	+0.1
1,955,869	+		RR42_RS29420	0.58	-0.3
1,955,870	-		RR42_RS29420	0.58	-1.6
1,956,089	+		RR42_RS29420	0.69	-2.3
1,956,090	-		RR42_RS29420	0.69	-1.1
1,956,127	+		RR42_RS29420	0.70	-2.3
1,956,127	+		RR42_RS29420	0.70	+0.7
1,956,127	+		RR42_RS29420	0.70	-0.6
1,956,241	+		RR42_RS29420	0.76	-0.6
1,956,242	-		RR42_RS29420	0.76	-1.0
1,956,309	-		RR42_RS29420	0.80	+2.6
1,956,787	+				-0.8
1,957,065	-		RR42_RS29425	0.33	+0.5
1,957,065	-		RR42_RS29425	0.33	+2.8
1,957,252	-		RR42_RS29425	0.57	-1.1
1,957,252	-		RR42_RS29425	0.57	+0.6
1,957,252	-		RR42_RS29425	0.57	+1.8
1,957,439	+		RR42_RS29425	0.81	-0.7
1,957,439	+		RR42_RS29425	0.81	-0.1
1,957,440	-		RR42_RS29425	0.81	-0.9
1,957,440	-		RR42_RS29425	0.81	-2.6
1,957,440	-		RR42_RS29425	0.81	-0.8
1,957,487	+		RR42_RS29425	0.87	+0.9
1,957,489	+		RR42_RS29425	0.87	+0.1
1,957,586	+				+0.7
1,957,587	-				+1.1
1,957,587	-				-0.0
1,957,660	+				-1.9
1,957,660	+				+0.4