Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29410

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29405 and RR42_RS29410 are separated by 122 nucleotidesRR42_RS29410 and RR42_RS29415 are separated by 66 nucleotides RR42_RS29405: RR42_RS29405 - hypothetical protein, at 1,950,809 to 1,951,711 _RS29405 RR42_RS29410: RR42_RS29410 - acetyl-CoA carboxylase, at 1,951,834 to 1,953,456 _RS29410 RR42_RS29415: RR42_RS29415 - acyl-CoA dehydrogenase, at 1,953,523 to 1,954,677 _RS29415 Position (kb) 1951 1952 1953 1954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1950.953 kb on + strand, within RR42_RS29405at 1950.953 kb on + strand, within RR42_RS29405at 1950.953 kb on + strand, within RR42_RS29405at 1950.953 kb on + strand, within RR42_RS29405at 1950.954 kb on - strand, within RR42_RS29405at 1950.954 kb on - strand, within RR42_RS29405at 1950.954 kb on - strand, within RR42_RS29405at 1950.977 kb on + strand, within RR42_RS29405at 1950.978 kb on - strand, within RR42_RS29405at 1950.983 kb on + strand, within RR42_RS29405at 1950.983 kb on + strand, within RR42_RS29405at 1950.984 kb on - strand, within RR42_RS29405at 1950.984 kb on - strand, within RR42_RS29405at 1950.984 kb on - strand, within RR42_RS29405at 1951.006 kb on + strand, within RR42_RS29405at 1951.007 kb on - strand, within RR42_RS29405at 1951.007 kb on - strand, within RR42_RS29405at 1951.018 kb on - strand, within RR42_RS29405at 1951.022 kb on + strand, within RR42_RS29405at 1951.022 kb on + strand, within RR42_RS29405at 1951.023 kb on - strand, within RR42_RS29405at 1951.193 kb on + strand, within RR42_RS29405at 1951.193 kb on + strand, within RR42_RS29405at 1951.224 kb on - strand, within RR42_RS29405at 1951.446 kb on - strand, within RR42_RS29405at 1951.452 kb on + strand, within RR42_RS29405at 1951.453 kb on - strand, within RR42_RS29405at 1951.550 kb on + strand, within RR42_RS29405at 1951.550 kb on + strand, within RR42_RS29405at 1951.551 kb on - strand, within RR42_RS29405at 1951.551 kb on - strand, within RR42_RS29405at 1951.551 kb on - strand, within RR42_RS29405at 1951.556 kb on + strand, within RR42_RS29405at 1951.556 kb on + strand, within RR42_RS29405at 1951.556 kb on + strand, within RR42_RS29405at 1951.557 kb on - strand, within RR42_RS29405at 1951.790 kb on - strandat 1951.790 kb on - strandat 1951.842 kb on + strandat 1951.842 kb on + strandat 1951.843 kb on - strandat 1952.257 kb on + strand, within RR42_RS29410at 1952.257 kb on + strand, within RR42_RS29410at 1952.258 kb on - strand, within RR42_RS29410at 1952.258 kb on - strand, within RR42_RS29410at 1952.299 kb on + strand, within RR42_RS29410at 1952.300 kb on - strand, within RR42_RS29410at 1952.300 kb on - strand, within RR42_RS29410at 1952.416 kb on + strand, within RR42_RS29410at 1952.416 kb on + strand, within RR42_RS29410at 1952.437 kb on + strand, within RR42_RS29410at 1952.437 kb on + strand, within RR42_RS29410at 1952.438 kb on - strand, within RR42_RS29410at 1952.550 kb on + strand, within RR42_RS29410at 1952.550 kb on + strand, within RR42_RS29410at 1952.550 kb on + strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.576 kb on - strand, within RR42_RS29410at 1952.579 kb on + strand, within RR42_RS29410at 1952.674 kb on + strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.806 kb on + strand, within RR42_RS29410at 1952.807 kb on - strand, within RR42_RS29410at 1952.917 kb on - strand, within RR42_RS29410at 1952.981 kb on + strand, within RR42_RS29410at 1952.981 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.074 kb on - strand, within RR42_RS29410at 1953.074 kb on - strand, within RR42_RS29410at 1953.103 kb on + strand, within RR42_RS29410at 1953.103 kb on + strand, within RR42_RS29410at 1953.104 kb on - strand, within RR42_RS29410at 1953.468 kb on + strandat 1953.527 kb on + strandat 1953.527 kb on + strandat 1953.716 kb on - strand, within RR42_RS29415at 1953.716 kb on - strand, within RR42_RS29415at 1953.721 kb on + strand, within RR42_RS29415at 1953.722 kb on - strand, within RR42_RS29415at 1953.877 kb on + strand, within RR42_RS29415at 1953.877 kb on + strand, within RR42_RS29415at 1953.878 kb on - strand, within RR42_RS29415at 1953.878 kb on - strand, within RR42_RS29415at 1953.964 kb on + strand, within RR42_RS29415at 1953.964 kb on + strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1954.036 kb on - strand, within RR42_RS29415at 1954.036 kb on - strand, within RR42_RS29415at 1954.159 kb on + strand, within RR42_RS29415at 1954.160 kb on - strand, within RR42_RS29415at 1954.218 kb on + strand, within RR42_RS29415at 1954.218 kb on + strand, within RR42_RS29415at 1954.219 kb on - strand, within RR42_RS29415at 1954.222 kb on + strand, within RR42_RS29415at 1954.222 kb on + strand, within RR42_RS29415at 1954.244 kb on + strand, within RR42_RS29415at 1954.245 kb on - strand, within RR42_RS29415at 1954.245 kb on - strand, within RR42_RS29415at 1954.312 kb on + strand, within RR42_RS29415at 1954.312 kb on + strand, within RR42_RS29415at 1954.313 kb on - strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.370 kb on - strand, within RR42_RS29415at 1954.370 kb on - strand, within RR42_RS29415

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,950,953 + RR42_RS29405 0.16 +1.6
1,950,953 + RR42_RS29405 0.16 +0.2
1,950,953 + RR42_RS29405 0.16 -1.3
1,950,953 + RR42_RS29405 0.16 +1.3
1,950,954 - RR42_RS29405 0.16 +1.3
1,950,954 - RR42_RS29405 0.16 +0.7
1,950,954 - RR42_RS29405 0.16 -0.6
1,950,977 + RR42_RS29405 0.19 +0.8
1,950,978 - RR42_RS29405 0.19 -0.0
1,950,983 + RR42_RS29405 0.19 -0.5
1,950,983 + RR42_RS29405 0.19 -1.6
1,950,984 - RR42_RS29405 0.19 -0.6
1,950,984 - RR42_RS29405 0.19 +1.7
1,950,984 - RR42_RS29405 0.19 +0.5
1,951,006 + RR42_RS29405 0.22 +0.1
1,951,007 - RR42_RS29405 0.22 +0.4
1,951,007 - RR42_RS29405 0.22 +0.1
1,951,018 - RR42_RS29405 0.23 -1.6
1,951,022 + RR42_RS29405 0.24 -0.0
1,951,022 + RR42_RS29405 0.24 +0.0
1,951,023 - RR42_RS29405 0.24 -3.2
1,951,193 + RR42_RS29405 0.43 +1.2
1,951,193 + RR42_RS29405 0.43 +0.1
1,951,224 - RR42_RS29405 0.46 -2.7
1,951,446 - RR42_RS29405 0.71 -0.2
1,951,452 + RR42_RS29405 0.71 -0.1
1,951,453 - RR42_RS29405 0.71 +0.7
1,951,550 + RR42_RS29405 0.82 -1.5
1,951,550 + RR42_RS29405 0.82 -0.4
1,951,551 - RR42_RS29405 0.82 -0.5
1,951,551 - RR42_RS29405 0.82 -2.7
1,951,551 - RR42_RS29405 0.82 +0.7
1,951,556 + RR42_RS29405 0.83 -1.4
1,951,556 + RR42_RS29405 0.83 +0.7
1,951,556 + RR42_RS29405 0.83 -0.3
1,951,557 - RR42_RS29405 0.83 -0.1
1,951,790 - +0.6
1,951,790 - -1.2
1,951,842 + -1.1
1,951,842 + -3.2
1,951,843 - -0.7
1,952,257 + RR42_RS29410 0.26 -1.9
1,952,257 + RR42_RS29410 0.26 -1.2
1,952,258 - RR42_RS29410 0.26 +0.7
1,952,258 - RR42_RS29410 0.26 -2.0
1,952,299 + RR42_RS29410 0.29 -0.4
1,952,300 - RR42_RS29410 0.29 -1.6
1,952,300 - RR42_RS29410 0.29 -0.9
1,952,416 + RR42_RS29410 0.36 -3.6
1,952,416 + RR42_RS29410 0.36 +0.2
1,952,437 + RR42_RS29410 0.37 -2.2
1,952,437 + RR42_RS29410 0.37 +0.1
1,952,438 - RR42_RS29410 0.37 +2.2
1,952,550 + RR42_RS29410 0.44 -1.6
1,952,550 + RR42_RS29410 0.44 -1.0
1,952,550 + RR42_RS29410 0.44 -0.7
1,952,551 - RR42_RS29410 0.44 +0.7
1,952,551 - RR42_RS29410 0.44 +0.9
1,952,551 - RR42_RS29410 0.44 +1.2
1,952,551 - RR42_RS29410 0.44 +0.7
1,952,576 - RR42_RS29410 0.46 -1.4
1,952,579 + RR42_RS29410 0.46 -0.8
1,952,674 + RR42_RS29410 0.52 -2.9
1,952,731 - RR42_RS29410 0.55 +0.0
1,952,731 - RR42_RS29410 0.55 -1.2
1,952,731 - RR42_RS29410 0.55 -0.1
1,952,806 + RR42_RS29410 0.60 -0.6
1,952,807 - RR42_RS29410 0.60 -0.1
1,952,917 - RR42_RS29410 0.67 +0.1
1,952,981 + RR42_RS29410 0.71 -1.5
1,952,981 + RR42_RS29410 0.71 -0.4
1,953,073 + RR42_RS29410 0.76 -2.5
1,953,073 + RR42_RS29410 0.76 +0.4
1,953,073 + RR42_RS29410 0.76 +1.7
1,953,073 + RR42_RS29410 0.76 -0.2
1,953,073 + RR42_RS29410 0.76 -2.5
1,953,074 - RR42_RS29410 0.76 +1.2
1,953,074 - RR42_RS29410 0.76 -2.7
1,953,103 + RR42_RS29410 0.78 -2.1
1,953,103 + RR42_RS29410 0.78 -1.1
1,953,104 - RR42_RS29410 0.78 +0.5
1,953,468 + +0.4
1,953,527 + +0.4
1,953,527 + -0.1
1,953,716 - RR42_RS29415 0.17 -0.2
1,953,716 - RR42_RS29415 0.17 -1.0
1,953,721 + RR42_RS29415 0.17 -0.4
1,953,722 - RR42_RS29415 0.17 -1.1
1,953,877 + RR42_RS29415 0.31 +1.3
1,953,877 + RR42_RS29415 0.31 -0.0
1,953,878 - RR42_RS29415 0.31 +0.2
1,953,878 - RR42_RS29415 0.31 +1.5
1,953,964 + RR42_RS29415 0.38 +0.8
1,953,964 + RR42_RS29415 0.38 +0.1
1,953,965 - RR42_RS29415 0.38 +1.5
1,953,965 - RR42_RS29415 0.38 -0.8
1,953,965 - RR42_RS29415 0.38 +0.3
1,953,965 - RR42_RS29415 0.38 -0.2
1,953,965 - RR42_RS29415 0.38 -0.4
1,953,965 - RR42_RS29415 0.38 -0.1
1,954,036 - RR42_RS29415 0.44 -0.8
1,954,036 - RR42_RS29415 0.44 +0.9
1,954,159 + RR42_RS29415 0.55 -0.0
1,954,160 - RR42_RS29415 0.55 -0.7
1,954,218 + RR42_RS29415 0.60 +0.5
1,954,218 + RR42_RS29415 0.60 +0.5
1,954,219 - RR42_RS29415 0.60 +1.5
1,954,222 + RR42_RS29415 0.61 -0.8
1,954,222 + RR42_RS29415 0.61 -0.3
1,954,244 + RR42_RS29415 0.62 -1.7
1,954,245 - RR42_RS29415 0.63 -1.5
1,954,245 - RR42_RS29415 0.63 +0.1
1,954,312 + RR42_RS29415 0.68 +0.8
1,954,312 + RR42_RS29415 0.68 -1.0
1,954,313 - RR42_RS29415 0.68 -0.2
1,954,369 + RR42_RS29415 0.73 +0.4
1,954,369 + RR42_RS29415 0.73 -0.6
1,954,369 + RR42_RS29415 0.73 +0.9
1,954,370 - RR42_RS29415 0.73 -1.8
1,954,370 - RR42_RS29415 0.73 +0.1

Or see this region's nucleotide sequence