Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28960

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,854,800	+				+0.8
1,854,801	-				+0.0
1,854,834	-				+0.4
1,854,999	-				+0.3
1,854,999	-				-1.0
1,854,999	-				+0.4
1,855,141	+				+0.1
1,855,141	+				-0.8
1,855,142	-				+0.0
1,855,142	-				-0.4
1,855,142	-				-1.2
1,855,153	+				-0.8
1,855,212	-				-1.2
1,855,212	-				+0.3
1,855,231	-				-3.1
1,855,231	-				+1.5
1,855,231	-				-0.8
1,855,245	-				+0.4
1,855,245	-				+0.5
1,855,320	+		RR42_RS28955	0.34	-1.6
1,855,321	-		RR42_RS28955	0.34	-0.6
1,855,321	-		RR42_RS28955	0.34	-1.9
1,855,398	+		RR42_RS28955	0.61	-0.4
1,855,398	+		RR42_RS28955	0.61	-0.4
1,855,416	+		RR42_RS28955	0.68	-1.2
1,855,417	-		RR42_RS28955	0.68	-1.8
1,855,505	-				-0.2
1,855,505	-				-1.1
1,855,559	+				+0.2
1,855,560	-				-0.4
1,855,795	+		RR42_RS28960	0.20	+0.9
1,855,795	+		RR42_RS28960	0.20	-3.3
1,855,796	-		RR42_RS28960	0.20	+0.8
1,855,813	+		RR42_RS28960	0.23	+0.2
1,855,813	+		RR42_RS28960	0.23	-1.6
1,855,813	+		RR42_RS28960	0.23	+1.9
1,855,813	+		RR42_RS28960	0.23	-1.1
1,855,813	+		RR42_RS28960	0.23	-0.6
1,855,843	+		RR42_RS28960	0.30	+1.1
1,855,980	+		RR42_RS28960	0.58	-0.7
1,856,018	-		RR42_RS28960	0.66	-1.6
1,856,018	-		RR42_RS28960	0.66	-0.8
1,856,018	-		RR42_RS28960	0.66	-3.1
1,856,399	+		RR42_RS28965	0.34	-2.1
1,856,400	-		RR42_RS28965	0.34	-1.6
1,856,400	-		RR42_RS28965	0.34	-3.2
1,856,400	-		RR42_RS28965	0.34	+0.4
1,856,602	+		RR42_RS28965	0.77	-1.0
1,856,602	+		RR42_RS28965	0.77	+0.2
1,856,603	-				+1.2
1,856,603	-		RR42_RS28965	0.78	-0.5
1,856,613	-		RR42_RS28965	0.80	-1.0
1,856,621	+		RR42_RS28965	0.81	-0.5
1,856,621	+		RR42_RS28965	0.81	-1.9
1,856,622	-		RR42_RS28965	0.82	-0.2
1,856,622	-		RR42_RS28965	0.82	+0.6
1,856,656	+		RR42_RS28965	0.89	-0.0
1,856,705	+				-1.3
1,856,705	+				-0.1
1,856,705	+				-0.3
1,856,705	+				-2.3
1,856,705	+				-0.2
1,856,705	+				+1.6
1,856,705	+				+1.5
1,856,706	-				-0.0
1,856,706	-				+1.3
1,856,706	-				+0.9
1,856,879	+		RR42_RS28970	0.14	+2.3